Plant FIBer expression Database

Lus10018587 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28260 434 / 2e-147 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039820
[exp]
812 / 0 AT4G28260 489 / 1e-169 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G133200
[exp]
521 / 0 AT4G28260 508 / 3e-177 unknown protein
PFAM info
Representative CDS sequence
>Lus10018587 pacid=23180461 polypeptide=Lus10018587 locus=Lus10018587.g ID=Lus10018587.BGIv1.0 annot-version=v1.0
ATGGCTGGAAAGTGGGAAGTGGGGCTTCTGCAGAAGATTGGTGTGTGTAGTTTGAAAGACCAACTAGTGAAAGCCACACTTCTGAGGGTGAGATCGCAGG
GACATCCATATGTGGAGCTTCGAACCGACAGAAAGAGGAATATCTTCTTCTGCACTCTGTGTCTTGCGCCGTGCTATAGCGATTCGGTGTTGCTTGATCA
CTTGAAGGGGAATCTACATACTGAAAGGCTGTGTGCTGCTAAGCTTACTCTTCTGAAGCCGAACCCATGGCCATTTAGTGATGGTGTTCATTTCTTTGAT
ACCTCTAGTGAGAATGGTGAAGGTCAAGGTGATGGGGATAATGGTAAGAGTAGTAAGTTGATTATGGAGCCTGAGAGGAGAAATTCCAACGATTTCGTGA
TTGTTGCATATGGTGATGATGCGAACACTCGCCGTGGTAAGCAGAATGGCCAAGCAGCGGTTAATGGCGATAAGGATTCGAATCAGACTGGAGAGAACTC
GGATATAGTAATTCCTGGTGTGCTCATTAAGGAAGAGATTTCTGATTTGAAGGTTAGGTTTATAGGTACTGGACAGATTGCTGCGAGGTTCTTCAAGATG
GATGAGATCAGTAGAATATGGTGTGAATGGTTGGGGGAGAAGGGCAGTGAAACTGAACTTCCAGAACACAAATATGCTGTTGTTACATTCTCTTATAACT
ACAGTTTGGCTAGGAAGGGATTGCTCGATGATGTGAAGTTGCTCCTCGGTTCTACTTCGATGTCATGCGAAGATGGGATTGAGACTAATGGGAAACGGAA
GAAGTCATTTTCCGATCCTGAAGATGTTAGCAAGTCGTTGAGTCAGAGTAATCACCAGTATGATTCGTCGGGAGAAGAATCTTCTGCTTCCAATAGTGCC
TCGTCGAAATTGCTATTGAACAACCGGTATGATGACGAGCTCCTTCAATCTCGGTTTTTGTCCAGCAAGACTGTCAGGCGTGAGCTTAGAAAGCAACAGC
GAATAGCAGCTGAAAGATTGTGCGATATATGCCAGCAGAAGATGCTTCCTGATAAGGATGTTGCAACTCTTTATAATATCAAGACCGGAAAACTTGCTTG
CGGTAGCAGAAACACCAATGGGGCATTCCATGTATTCCACACTTCCTGCCTCATTCTCTGGGTACTACTCTGTGAATTTGAAATGCTTACTACGAAGCCA
GCCAGTTCTAAAGGGAGACGGAAATCTCGAAGGAAGAACAGTGGCAAGCAAAATGGAAGAGGTAAGGCCACAGAGAATAATATCTTGAAGACCCAAATTA
CTTCAGTCTTCTGCCCAGAGTGCCAAGGAACCGGCTTGGATGTTGATGGTGATGAGCTCGAGAAACCGGGATTCCCCCTCTCCGAGATGTTCAAATACAA
GATGAAAGTGAGCGACGGGCGTCGAGCATGGATGAAAAGTCCCGAATTGCTGGAGAACTGCTCCATGGGGTTCCACTTCCCTTCCCAGTCTGAAGAAACC
TTCGAGGTTCGTGTGATTCCCTATGTCTGTGAATGTACTAATCAACTCTTTTCATTGTCTGAGACCTCGTGTTTTTTTCTAGGAGGAGGTTTCTCAGTTG
AAGTTGCTGCACTTCTACAGAGCCGATGGCTAGTGTTCTAA
AA sequence
>Lus10018587 pacid=23180461 polypeptide=Lus10018587 locus=Lus10018587.g ID=Lus10018587.BGIv1.0 annot-version=v1.0
MAGKWEVGLLQKIGVCSLKDQLVKATLLRVRSQGHPYVELRTDRKRNIFFCTLCLAPCYSDSVLLDHLKGNLHTERLCAAKLTLLKPNPWPFSDGVHFFD
TSSENGEGQGDGDNGKSSKLIMEPERRNSNDFVIVAYGDDANTRRGKQNGQAAVNGDKDSNQTGENSDIVIPGVLIKEEISDLKVRFIGTGQIAARFFKM
DEISRIWCEWLGEKGSETELPEHKYAVVTFSYNYSLARKGLLDDVKLLLGSTSMSCEDGIETNGKRKKSFSDPEDVSKSLSQSNHQYDSSGEESSASNSA
SSKLLLNNRYDDELLQSRFLSSKTVRRELRKQQRIAAERLCDICQQKMLPDKDVATLYNIKTGKLACGSRNTNGAFHVFHTSCLILWVLLCEFEMLTTKP
ASSKGRRKSRRKNSGKQNGRGKATENNILKTQITSVFCPECQGTGLDVDGDELEKPGFPLSEMFKYKMKVSDGRRAWMKSPELLENCSMGFHFPSQSEET
FEVRVIPYVCECTNQLFSLSETSCFFLGGGFSVEVAALLQSRWLVF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28260 unknown protein Lus10018587
[exp]
0 1
AT4G28260 unknown protein Lus10039820
[exp]
1.7 0.9353
AT2G22730 Major facilitator superfamily ... Lus10003528
[exp]
2.4 0.9355
AT1G48790 AMSH1 associated molecule with the S... Lus10009006
[exp]
3.3 0.9409
AT1G54710 ATATG18H homolog of yeast autophagy 18 ... Lus10002257
[exp]
4.9 0.9168
AT1G55510 BCDH BETA1, BCD... branched-chain alpha-keto acid... Lus10013401
[exp]
7.7 0.9272
AT1G48790 AMSH1 associated molecule with the S... Lus10009634
[exp]
8.9 0.9197
AT5G27830 unknown protein Lus10029881
[exp]
11.4 0.9268
AT5G56290 EMB2790, PEX5, ... EMBRYO DEFECTIVE 2790, ARABIDO... Lus10032883
[exp]
12.4 0.9061
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Lus10000076
[exp]
14.7 0.9226
AT1G23870 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTH... Lus10012990
[exp]
14.7 0.9220

Lus10018587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.