Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 281 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21705 197 / 4e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 196 / 2e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 184 / 3e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 180 / 9e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 175 / 6e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 156 / 9e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01990 149 / 2e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28000 147 / 2e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02370 147 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033698 [exp] 240 / 8e-73 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016229 [exp] 229 / 4e-70 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003590 [exp] 222 / 4e-66 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 186 / 7e-53 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 181 / 6e-51 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 180 / 2e-50 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 179 / 3e-50 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 179 / 5e-50 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 174 / 2e-48 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G133000 [exp] 381 / 3e-128 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 313 / 3e-101 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 289 / 4e-92 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 285 / 2e-90 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 282 / 1e-89 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 237 / 3e-72 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 216 / 4e-64 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 216 / 8e-64 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 214 / 1e-63 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 212 / 4e-62 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018588 pacid=23180369 polypeptide=Lus10018588 locus=Lus10018588.g ID=Lus10018588.BGIv1.0 annot-version=v1.0 ATGAAGCTCATCTCCGGCAAGCTCCCGCCTTTATCCCCTCACAATCACCGGATCAAATCCCATCTCTCTCCCATCATTTTCGCTTCGTTCTACTCCACCG AACCAGAACCCGAAACTCCTTCGCCATCTTCCCTGCTCTATCACAGGATCGAGAAAATCAGAGATCCAAAAGCCTCCATAACTCCGCTGCTCGATCAATG GATCGAAGAAGGAAACCCCGCCAACGAACAGCTCCGGTTCCTCGTCGCAAGGATGAAGAGCTTCCGACGCTACCACCACGCCTTGCAGATATCGAACTGG ATATCGGCTCGATCGTATCTCCCATTGACGGGTCAAGACGTTGCAACTAGGTTAGATTTGATCTATAGAGTTCATGGATTAGCTGAGGCAGAGAAGTACT TCAACAACCTGTCAAGGAAAATGAAATTTGGGAATGTGTACGGTAATCTCTTGAACATCTACGCACAGGAGAAATGTGTGGAGAAAGCTGAAGCACTTGT ACAGGAAATGAAGGAGAAAGGGATGTTGAATTTTGCCTATTCTTACAACTTGCTGATCAACCTCTACTGCAAAGTTGGCGACTTTGAAAGAATCGATCTG CTGCTCGAGGAGATGCGAATCAACGGAATCCCCCACGACAGGTTCACTACCAACAACCTCGTTGCAGCTTACGTTGCTGAGCCGAACATTCCACGGATGG AAGAGACGATTTCCAAGATCGGGGATTCGGTAATGTCGTGGAGTTTGTACACGACGGCAGCAAACGGATATACGAAGGTGGGATCAATGGATAAAGCACT GGAAATGTTGAAGAAGGCTGAAACAATGATGCCGAATCACGGCAGAACAGCTGCGGTGGAGTTTTTACTCACTCTGTACACGAAAGTCGGCAAAAGAGAG GAGCTTTATCGTGTCTGGAACGATTACAAGCCGACTCGTGAACCGTTTGCGAATAAGTATGGATGCATGATCAGTTGCCTGGCGAAGCTGGACGATCTGG AGGGAGCGGAGGAGGTTTACGAGGAGTTTCTGTCGCGACGTGGCGGAGTGGTGGTGGATTTTCGGGTGGTGAATAGACTTTTGGTGGGTTATTGCAGGAG GGGGTTAATGGAGAAGGCTGAGTCTTTGGTGGAGAATGCTGCAGGGGGGAAAGATGGCGGCGGGAAGGTGAGTTATGCAAGTACTTGGCATATAATGGCG AGGGGGTATTTGGATGCGGGGAGGATGGAGGAGGCGGTCGAGATGTTGAAGAGGGCGATGGCATTGGAGAGGAGCAAATGGAGGCCGAGCGACAGTGTGT TGGAATCATGCTTGGAGTATTTGGAGAAGAAGGGTGATGCTGAAGAGATGGAGGAGGTTGCGAAATTGTTGAAGGGGGTTGAGAACGAGCTTTCGGGGGA TTTGTATCGGAGGTTGGTGAGGACTTATGTTGCTGCTAAACAGTCTGGAGATGGTGTTCAGGAGGATAGTGTGACGAGCAATGAAGCTACTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10018588 pacid=23180369 polypeptide=Lus10018588 locus=Lus10018588.g ID=Lus10018588.BGIv1.0 annot-version=v1.0 MKLISGKLPPLSPHNHRIKSHLSPIIFASFYSTEPEPETPSPSSLLYHRIEKIRDPKASITPLLDQWIEEGNPANEQLRFLVARMKSFRRYHHALQISNW ISARSYLPLTGQDVATRLDLIYRVHGLAEAEKYFNNLSRKMKFGNVYGNLLNIYAQEKCVEKAEALVQEMKEKGMLNFAYSYNLLINLYCKVGDFERIDL LLEEMRINGIPHDRFTTNNLVAAYVAEPNIPRMEETISKIGDSVMSWSLYTTAANGYTKVGSMDKALEMLKKAETMMPNHGRTAAVEFLLTLYTKVGKRE ELYRVWNDYKPTREPFANKYGCMISCLAKLDDLEGAEEVYEEFLSRRGGVVVDFRVVNRLLVGYCRRGLMEKAESLVENAAGGKDGGGKVSYASTWHIMA RGYLDAGRMEEAVEMLKRAMALERSKWRPSDSVLESCLEYLEKKGDAEEMEEVAKLLKGVENELSGDLYRRLVRTYVAAKQSGDGVQEDSVTSNEATAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	0	1
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	1.0	0.9424
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	2.4	0.9279
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	4.0	0.9245
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	6.6	0.9374
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	6.7	0.9054
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030894 [exp]	9.8	0.8803
AT5G57290			60S acidic ribosomal protein f...		Lus10010890 [exp]	10.7	0.9233
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	13.1	0.8740
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	13.6	0.9222
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	14.5	0.8985

Compare expression of checked genes

Lus10018588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.