Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03687 400 / 2e-138 DTW domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039823 [exp] 648 / 0 AT1G03687 455 / 1e-160 DTW domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G132100 [exp] 459 / 3e-161 AT1G03687 458 / 2e-161 DTW domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03942 [flax] [poplar] DTW DTW domain
Representative CDS sequence Show only first row Show all	>Lus10018590 pacid=23180371 polypeptide=Lus10018590 locus=Lus10018590.g ID=Lus10018590.BGIv1.0 annot-version=v1.0 ATGCTTTCTCCAGCTGCTGCTACTAAGCCGTTCTCCCAATTCAAGCACTTGATTCAACCCTTTCCCCATTTCTCCACAACCCTTATCACTTTCATGGATT CTCCACCCAGAACATTCTCCAATTCACCGGCACGCTCTTCGGCCGGACACTCAGACGGCGGAGGCGGCGGGTCGATAACGTTGCAGGAGTGGCAGGGATG GGGCGCCGCGTCTCCGATACCATCCAAGGTCTTGGAGGTCATCGACGATTTGAAGCTTCTGGAGTCGAACATCGATGCCCAGATGAGGTTCGGCGGTTCC GGCGGGAAGCTCAAGGGAGATTTTAGAACTCATGAAGAGAAAAAGCATAGAGCAAAGTATGAAGCTTTGGATGGTTCTGAGAACAAGATCCAGTTCTTTT CGGCTCGGCAAATTGCTTGCAGATTGCTGGGGAGGGGTTCACTTGATTTGCAATGCTGGCTTCCTATGGAAGAAGACTGTATGTGTTCACAACTGAAGCC GTGCGCTTTGTGGCCTGGGATTCGATTCTGGGTATATATGCCTCCAAAGGACTTCCTAAGACAGAACAACACTGGAAAGCTACTGTGGCAAGTATTTGGA ACTCGTTCAGCTACTCTGTGCCTTTACGGTATCTCCGAAGATGAGGAGATTATGTGGAATGCATTTAAAGCTGCAGGCAAAAACAAGGTCTGGTGTCTGT ATCCGAACAAAAATGCTCAAACGAAATCGGTCCCTGAAGCTTTTGGTCAAGAATCTATAGCAAATCAAGAGATCATTCCCGATCCGTTCTGTGTAGTTGG TGAGTTTGATGATGCTTATTTATGCCGTGGACAGTCAAATGCAGATAAAGCCTTAAACTTTCGGTTGATTGATGGCACATGGAACAACTCTACTGCAATG TTCCGGCGTTTAAAGGAGAAGTCGAAATCCACGTGGGGGGACGAGGACGATCTTCCTTGCATTTCCTTGGCAACCGGAGTATCGACAATGCACAAACTCA GGCCGCAGCCTTCTTGGGACCGAACATGTACCGCAGCGGCAGCTGCCAGGCTGCTGTTTGAGCTTCACGAACTAGTCGGGTTCAGCTGCATTGGCCTGGA GAAGCAAGGCGAAGCATTGGAGAATAACCTCGCCACGGTTTTGGAAGCTCTAACAACTCGTGGGCTTAGGATGGGCCGGTCTGTTACCCGGACAGTTAAG ACGCAACACCGGCGTTTGCTGATGAACTAG
AA sequence Show only first row Show all	>Lus10018590 pacid=23180371 polypeptide=Lus10018590 locus=Lus10018590.g ID=Lus10018590.BGIv1.0 annot-version=v1.0 MLSPAAATKPFSQFKHLIQPFPHFSTTLITFMDSPPRTFSNSPARSSAGHSDGGGGGSITLQEWQGWGAASPIPSKVLEVIDDLKLLESNIDAQMRFGGS GGKLKGDFRTHEEKKHRAKYEALDGSENKIQFFSARQIACRLLGRGSLDLQCWLPMEEDCMCSQLKPCALWPGIRFWVYMPPKDFLRQNNTGKLLWQVFG TRSATLCLYGISEDEEIMWNAFKAAGKNKVWCLYPNKNAQTKSVPEAFGQESIANQEIIPDPFCVVGEFDDAYLCRGQSNADKALNFRLIDGTWNNSTAM FRRLKEKSKSTWGDEDDLPCISLATGVSTMHKLRPQPSWDRTCTAAAAARLLFELHELVGFSCIGLEKQGEALENNLATVLEALTTRGLRMGRSVTRTVK TQHRRLLMN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03687			DTW domain-containing protein ...		Lus10018590 [exp]	0	1
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	1.0	0.8492
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10012229 [exp]	4.0	0.8075
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003353 [exp]	4.9	0.7838
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	10.4	0.7967
AT2G24970			unknown protein		Lus10026900 [exp]	11.6	0.7830
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	12.0	0.7958
AT1G79915			Putative methyltransferase fam...		Lus10025778 [exp]	14.7	0.7842
					Lus10035486 [exp]	20.9	0.7873
AT5G04520			Protein of unknown function DU...		Lus10017450 [exp]	21.4	0.7397
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	23.7	0.7794

Compare expression of checked genes

Lus10018590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.