Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28300 252 / 1e-77 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) AT5G14540 91 / 3e-19 Protein of unknown function (DUF1421) (.1) AT3G01560 77 / 8e-15 Protein of unknown function (DUF1421) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039827 [exp] 717 / 0 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10033692 [exp] 311 / 2e-100 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10031645 [exp] 310 / 8e-100 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10032138 [exp] 85 / 3e-17 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10014549 [exp] 85 / 3e-17 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G095400 [exp] 379 / 2e-126 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.013G131600 [exp] 378 / 1e-125 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.001G348500 [exp] 79 / 3e-15 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 72 / 4e-13 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.T125008 [exp] 67 / 1e-11 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF07223 [flax] [poplar] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Lus10018593 pacid=23180400 polypeptide=Lus10018593 locus=Lus10018593.g ID=Lus10018593.BGIv1.0 annot-version=v1.0 ATGGCTTCTGGATCGTCGGGACGGCCCAGCTCGGGTTCCAAGGGATTCGAGTTTGACTCCGATGACATCCTCTGCTCCTACGATGACTACTCCAATCAGG AAACTCCTAACGGGAATCACTCCGATCCCATTCCCGCTCCCGCTCCCGCTCCTAATTCTTCCAAGGGTTTTGAGAAAAGCAGGATGTCTCGATCATCTGT GTATCAACCTGCTTCGTATGGTCAGCCTGATGATTCGTTCCACCAAGAGGTGATCTCTGCAGTGGAGAGGAGCATGAAACGGCATTCCGAAAACCAGATG AGGTTTCTCGAGGGAATCAGTTCTCGGCTCTCCCAGCTGGAGCTGTACTGCTACAATCTCGATAAATCTATCGGCGAGATGCGATCTGATTTGACCCGTG ACCATACTGAGACTGACACGAAGCTCAAAGCTGTTGAGAAGCATCTTCATGAGGTTCATAGATCTGTTCAGATTCTAAGGGATAAGCAAGAGCTTGCTGA GACCCAGAAAGAACTAGCTAAGCTTCATCTTGTGCAGAAGGAATCCACTTCTTCACACCATTCACAATCTAACGAAGAAAGGGCTGCATCGCCTGCTTTT GATCCGAAAAAGAATGATAACGCCACTGAAGGACACAACAACCAACAATTGGCTCTTGCTCTTCCGCAGCAAGTTGTACCTCAGCAGCAACAGATATCTG CTCCTCCCCCGCCTTCTCATGTCCCACAACCGAATCTGGCTCAAGGACAACCTCAGACTTACTATCTATCACCAGGGCAGTTAGCTGTTGCACCTCCCTC GCAGTCCCAGCCTCCGCACAGCCAGTATATGACTCCTGATCCGCAATACCGACCAAACCAAATGCAGGGGATGCAATCACAGCCAGTTCCGGTACAATCA AGTCAGGCACAACAACCGCCCGGCCAGCAATATCCTCAGTATCAACAGCAGTGGCCTCCTCAGCAGGTTCAAGTACAACAAACTCAGCAACCAGCAATGC AGGCTCAAGTCAGGCAGCAATCAAACACAGTTTACCAAGAGACATTGCCGAGCAGCATGCCTATGCCGGCATCATACTCCACAATTCCACAGCCTTTATC GAGCCGTGTTGATACCATTCAATACGGATACGGAACCGGGAGACCAGCTCCTCAGCAGCTTCCACCTCAGCAGATGAAGGTCCCGTTCGGTGCCCAACCC GGCGACAGCTTCACAACACCCGGACCGCATGGTGCAACATATGTGGTTTACGACACCGAAGGAGGTAATAGACCCCACCCTCCGGCTCACTTCTCGCAAG GTGGATACTCCAACTCCCTCCCAGGTGGTGCGGTGGCTCCTCCTAACATGATGCCCCGAAACCCCACTCCGCCGCCCCAGTTTGTCCGCAGCCATCCTTA CAACGAGCTGATTGAGAAGCTGGTCAACATGGGGTTCCGAGGCGACCATGTGATGGGCGTCATCCAGAGGATGGAGGAGACCGGGCAGCCCGTTGATTTC AATGCCGTGATCGATAGGTTGAATGTGCACCCTTCCGGCACCAGCTCTCAGAGAGGCTGGTCAGGCTGA
AA sequence Show only first row Show all	>Lus10018593 pacid=23180400 polypeptide=Lus10018593 locus=Lus10018593.g ID=Lus10018593.BGIv1.0 annot-version=v1.0 MASGSSGRPSSGSKGFEFDSDDILCSYDDYSNQETPNGNHSDPIPAPAPAPNSSKGFEKSRMSRSSVYQPASYGQPDDSFHQEVISAVERSMKRHSENQM RFLEGISSRLSQLELYCYNLDKSIGEMRSDLTRDHTETDTKLKAVEKHLHEVHRSVQILRDKQELAETQKELAKLHLVQKESTSSHHSQSNEERAASPAF DPKKNDNATEGHNNQQLALALPQQVVPQQQQISAPPPPSHVPQPNLAQGQPQTYYLSPGQLAVAPPSQSQPPHSQYMTPDPQYRPNQMQGMQSQPVPVQS SQAQQPPGQQYPQYQQQWPPQQVQVQQTQQPAMQAQVRQQSNTVYQETLPSSMPMPASYSTIPQPLSSRVDTIQYGYGTGRPAPQQLPPQQMKVPFGAQP GDSFTTPGPHGATYVVYDTEGGNRPHPPAHFSQGGYSNSLPGGAVAPPNMMPRNPTPPPQFVRSHPYNELIEKLVNMGFRGDHVMGVIQRMEETGQPVDF NAVIDRLNVHPSGTSSQRGWSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28300			Protein of unknown function (D...		Lus10018593 [exp]	0	1
AT4G28300			Protein of unknown function (D...		Lus10039827 [exp]	1.0	0.9678
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	9.2	0.7656
AT4G13330			S-adenosyl-L-methionine-depend...		Lus10023725 [exp]	11.5	0.6796
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	18.8	0.7761
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	19.2	0.7377
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	23.1	0.7146
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	29.4	0.7424
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10028129 [exp]	32.9	0.7480
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	39.5	0.7371
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	39.9	0.7397

Compare expression of checked genes

Lus10018593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.