Plant FIBer expression Database

Lus10018594 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03560 469 / 3e-159 FOU2, ATCCH1, ATTPC1 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039829
[exp]
707 / 0 AT4G03560 1050 / 0.0 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G131100
[exp]
504 / 2e-172 AT4G03560 946 / 0.0 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0030 Ion_channel PF00520 Ion_trans Ion transport protein
Representative CDS sequence
>Lus10018594 pacid=23180463 polypeptide=Lus10018594 locus=Lus10018594.g ID=Lus10018594.BGIv1.0 annot-version=v1.0
ATGGAGAGTCCTCTGCTGGGGGAGACCAGCGACCAGAGCCGATACAGTTCGGATCACATCTTCCGACGCCGCGCCGACGCCATTGCTTACGGCTCCAACT
TCCAGCGCGCAGCTGCTCTCGTTGATCTGGCGGAAGATGGAGTTGGCTTACCGGAGCAGATTCTCGACCACTCCAGCTTTGGAGCTGCGGCGAAGAATTA
CTTTGTGTTTATCAAGTTTGAATTCATTTGGACGCTTAACTACTTTGCTCTAGTTCTGCTGAATTTCTTGGAGAAACCGCTTTGGTGTGCAAACTGTACT
TCGGATTGCTGTCAAGATAGAGATTTCTTCTACTTAGGACAGTTGCCATACTTGAACAGCTTGGAGACCCTTATCTATGAGGTTGTCTGCCTTGCAATCT
TGGTTGCTGATTTACTAGTTTATGGCCTCTACTTGTCTCCAGTGGCCTTCAGTGTTCTTCCGGTCAGGATTGCTCCGTATATAAGAGTTGTTTTTTTCAT
TCTGAGCATCAGTTGGGTGGCCTATGTCATGTTTGAAGATACTGAGCAAGGGAGAACAATATTTACATCATATGCCATCACATTGTATCAGATGTTTGTC
TTGTTTACAACATCTAACAATCCAGATGTGTGGATACCTGCATATAAAGAATCACGATGGTATTCCCTGTTCTTTGTTATCTACGTGCTACTGGGAGTCT
ACTTTGTCACCAACTTGATTCTTGCTGTCGTGTATGATAGCTTCAAAAATCAGCTTGTGAAACAAGTTGCTGAGGCGGACAACATGAGGAAAAGAACGTT
GATGAAAGCCTTCAATCTCATTGATAGATTTATAAACTTGGATGAATTTGCCGACCTCTGCCATGCCATTGCTTTAAGATTCCACAAGGAAGATGTTGAA
TCTTACTTCGAATACTTTGCCAACGTTTACCATGCACCATTCTCAGAGAAGCTAAAAGACTTTGTGAAACGCCCTATATTCGGATATATAGTATCCTTCA
TTCTTGTCGTCAATCTTGTCGCTGTGATCATCGAAACAACGCTTGATATAGCAGACAATTCTGGTCAAAAGGCCTGGCAGGTGGCTGAGTTTGTATTTGT
TATAGGAGAAACTGCGACTTTCGTATCCCCAGACGCTCAAACATTCTTCTCAAATGGAGAATGGTATAGCTACACGGAATTAACTGGGAACCGTTGGACT
GTAGCTTACTTCATCAGCTTCTACCTAATTACGGTTCTACTCCTCTTGAATTTGGTTGTTGCGTTTGTCTTGGAGGCATTCTTCGCTGAAATGGAACTCG
AATCCTCGGAGGAAGAAGATGAGGATTCCAGCAACACAAAGCCTCGTACCCGATATATGGGGTATGTACATGTACCTACTAGCTATTCATCCGAGTTTCA
CAAAATAACTGCGATTTTGTTTCATCAATTTGGAAGAACTCATTGTGATTGTCTGGTTGATGCAGCACGAAAACTCGCAGTCAGAGAGTTGACGTTCTTC
TCCATCATATGTTGA
AA sequence
>Lus10018594 pacid=23180463 polypeptide=Lus10018594 locus=Lus10018594.g ID=Lus10018594.BGIv1.0 annot-version=v1.0
MESPLLGETSDQSRYSSDHIFRRRADAIAYGSNFQRAAALVDLAEDGVGLPEQILDHSSFGAAAKNYFVFIKFEFIWTLNYFALVLLNFLEKPLWCANCT
SDCCQDRDFFYLGQLPYLNSLETLIYEVVCLAILVADLLVYGLYLSPVAFSVLPVRIAPYIRVVFFILSISWVAYVMFEDTEQGRTIFTSYAITLYQMFV
LFTTSNNPDVWIPAYKESRWYSLFFVIYVLLGVYFVTNLILAVVYDSFKNQLVKQVAEADNMRKRTLMKAFNLIDRFINLDEFADLCHAIALRFHKEDVE
SYFEYFANVYHAPFSEKLKDFVKRPIFGYIVSFILVVNLVAVIIETTLDIADNSGQKAWQVAEFVFVIGETATFVSPDAQTFFSNGEWYSYTELTGNRWT
VAYFISFYLITVLLLLNLVVAFVLEAFFAEMELESSEEEDEDSSNTKPRTRYMGYVHVPTSYSSEFHKITAILFHQFGRTHCDCLVDAARKLAVRELTFF
SIIC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03560 FOU2, ATCCH1, A... FATTY ACID OXYGENATION UPREGUL... Lus10018594
[exp]
0 1
AT5G64740 PRC1, IXR2, E11... PROCUSTE 1, ISOXABEN RESISTANT... Lus10041063
[exp]
2.4 0.8864
AT4G36360 BGAL3 beta-galactosidase 3 (.1.2) Lus10028348
[exp]
4.7 0.8586
AT3G61130 GAUT1, LGT1 galacturonosyltransferase 1 (.... Lus10041389
[exp]
5.9 0.8394
AT1G26850 S-adenosyl-L-methionine-depend... Lus10036747
[exp]
8.1 0.8382
AT4G03560 FOU2, ATCCH1, A... FATTY ACID OXYGENATION UPREGUL... Lus10039829
[exp]
8.4 0.8335
AT3G01810 unknown protein Lus10022341
[exp]
14.4 0.8302
AT5G64740 PRC1, IXR2, E11... PROCUSTE 1, ISOXABEN RESISTANT... Lus10006161
[exp]
14.6 0.8464
AT3G62660 GATL7 galacturonosyltransferase-like... Lus10000262
[exp]
17.5 0.8166
AT4G36360 BGAL3 beta-galactosidase 3 (.1.2) Lus10041798
[exp]
19.6 0.8187
AT4G24610 unknown protein Lus10000766
[exp]
24.5 0.8522

Lus10018594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.