Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70890 56 / 2e-10 MLP43 MLP-like protein 43 (.1) AT1G23120 54 / 8e-10 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70830 51 / 2e-08 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70880 49 / 6e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 49 / 2e-07 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70870 44 / 5e-06 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039830 [exp] 296 / 6e-105 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2) Lus10030840 [exp] 64 / 4e-13 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10030646 [exp] 63 / 6e-13 AT1G24020 189 / 3e-62 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G131000 [exp] 213 / 7e-72 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2) Potri.010G096000 [exp] 59 / 9e-12 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.001G405600 [exp] 55 / 6e-10 ND / Potri.011G127800 [exp] 54 / 1e-09 ND / Potri.004G033000 [exp] 44 / 5e-06 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.004G032900 [exp] 43 / 2e-05 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.010G000600 [exp] 40 / 0.0002 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10018595 pacid=23180390 polypeptide=Lus10018595 locus=Lus10018595.g ID=Lus10018595.BGIv1.0 annot-version=v1.0 ATGAAGAGCATGAAAGGAGAAGTGGAGTTGGAGATGGAGGCAGAGAGAGCATGGAGGATGTACATAGACAACGACACCGTCAGCAAAATCAACCCTCAAA TGCTTTCACTGGCCAAGTATTTGGAAGGAGATGGCAGCCCTGGTAGCATCAGACTCTTCCAGCTTGGCCCTGCTGTGCAAAGCTACGTGAAGGAATCGAC GCAGAAGATCGAACAAATCGAGACCAGCCGGTCAATAACCTACACAGTCATCGCCGGCGACCTCAGCAACATGTACAATCCTTACAGGGTCACCTTCTCC TTCCTCCCTTCCGACAACCACAAAAAATGCATTGCTCAATGGCAGGCCGAGTTCAAGCCAATTTCTGAGTTGACCCCTCTGCCGGAGCAGGCCAGAGACA CTGCGCTCACCTTCCTCAAGTCGTTCGATAAGTTCGAGCGATCGCCTAATTCTGCATAA
AA sequence Show only first row Show all	>Lus10018595 pacid=23180390 polypeptide=Lus10018595 locus=Lus10018595.g ID=Lus10018595.BGIv1.0 annot-version=v1.0 MKSMKGEVELEMEAERAWRMYIDNDTVSKINPQMLSLAKYLEGDGSPGSIRLFQLGPAVQSYVKESTQKIEQIETSRSITYTVIAGDLSNMYNPYRVTFS FLPSDNHKKCIAQWQAEFKPISELTPLPEQARDTALTFLKSFDKFERSPNSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	0	1
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	2.4	0.8325
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	2.6	0.7942
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	4.0	0.7814
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	4.2	0.8151
AT3G27030			unknown protein		Lus10041550 [exp]	4.5	0.8117
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	5.7	0.8156
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	6.9	0.7960
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	10.9	0.7595
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	11.2	0.7982
AT5G41590			Protein of unknown function (D...		Lus10028756 [exp]	13.0	0.7349

Compare expression of checked genes

Lus10018595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.