Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53025 337 / 2e-110 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 326 / 2e-105 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 297 / 4e-98 Ubiquitin-conjugating enzyme family protein (.1) AT2G33770 282 / 4e-86 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT2G16920 284 / 1e-85 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT1G14400 64 / 4e-12 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT2G02760 63 / 1e-11 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT5G41700 61 / 4e-11 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 60 / 1e-10 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 60 / 2e-10 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039831 [exp] 817 / 0 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10028151 [exp] 347 / 2e-114 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10042852 [exp] 285 / 9e-91 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1) Lus10034472 [exp] 284 / 3e-87 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10005854 [exp] 276 / 5e-84 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10025070 [exp] 276 / 4e-83 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10001214 [exp] 267 / 6e-83 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10037778 [exp] 250 / 3e-79 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10016921 [exp] 227 / 6e-71 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130800 [exp] 481 / 6e-167 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 384 / 3e-127 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 383 / 6e-127 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G052600 [exp] 298 / 6e-92 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.010G146500 [exp] 273 / 4e-88 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 288 / 5e-88 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 271 / 4e-87 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.004G176000 [exp] 276 / 2e-82 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.009G136000 [exp] 273 / 3e-81 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.013G108500 [exp] 144 / 3e-39 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10018596 pacid=23180475 polypeptide=Lus10018596 locus=Lus10018596.g ID=Lus10018596.BGIv1.0 annot-version=v1.0 ATGGATCTTGAGGTGGCGGATTCCTCCTCTGGTTCGACCCACAAGAAGCTCAAGCAAAACGAGGTCTTGGATGGAATTGATGCTGAAATTGAAGTCATAA CCAAAGAGGTTGGTGCTGATACGAAGGGGAAATCGAAAATGGATGATGATGATTCGTTGGCGAACGGAAATAAGGATGCTTCCGGATCGGTATTAGGCAG TGGTGATCAGGCCAAGAGTGATTTTAGCTATGAGTTTTCTGATCACGACGAGGATCTCTTGGATGACGAGAATTATGCCGACTCTATGTCTGATTACGAA ATGGATGATGATGATACCAACGTGTACGAAGATGAATATGCGAAAATTCAATCTCAATTCGACAATGTGGATCTTCCCACAGGGGTGGAGGTATCCATGC CTTGGTTAAAGGAATCGGCTGATACTGTCGAAACCCCTGCAGTTCCCAATAGTCATGCTCAAGATTTTGAAAGTCTGCTATCGTCTAGTGCTAGTGTTTT AGCTAGTAAAGGGGAGCCGACCTCTAGCAGTAAGGTAGAAGAAGGTGGCATCGAAAAGTTTAAAGATTTTAAACTGTTTGATATGGTGGAGGATCATTCG GATCATCACTACAATCGCACGGGCGAGCAGGCGGTTCCTGCAAAGAATTGGGCGAAGAGAATCCAGGAGGAATGGAAGATTCTTGAGAACAACTTACCTG AGACGATCTTTGTTAGAGTTTATGAATCAAGGATGGACCTATTGAGATCTGTCATTGTTGGGCCGGCTGGCACTCCTTACCACGATGGCCTATTCGTCTT TGACTGCCTCTTCCCACCGAACTATCCCAATGCTCCACCACTGGTATACTACTACTCCGGTGGACTCCGATTGAATCCGAATCTGTACGCATGTGGCAAA GTCTGCCTGAGCCTATTGGGAACATGGAGTGGGGATAAAAACGAGAAGTGGATCGCAGGGAAATCTACCATGCTTCAAGTTCTAGTGTCCATACAAGCTC TCATTTTGAATACACAGCCATACTACAACGAGCCGGGATACGCGAACCAAACCGGACCGGCAGGGCTTAGAAAAAGTAGAGAGTACAGCGAAACTGTCTT CATTTTGTCTCTGAAGACAATGATGTACACCCTTAGAAGACCTCCAAAGCATTTCGAAATCCTCGTGAAGGGACATTTCCAGGAGGTCGCTCACAACATC CTGATAGCATGCAAAGCATATGCCGAAGGAAGGGAAGTCGGTCGAATTATGGTGAAAGATGGGGTTGCTGATGTTAGCAATGCAGAGAAGAACGGCTCGC CCGACTTCAAGGGCGAAGTGAAGAAGATGATCGACATTCTTATCAACACCTTTTCCAGATTTGGATCGATAGATTGCGAGCGGTTTCGAACAAGTAATTG A
AA sequence Show only first row Show all	>Lus10018596 pacid=23180475 polypeptide=Lus10018596 locus=Lus10018596.g ID=Lus10018596.BGIv1.0 annot-version=v1.0 MDLEVADSSSGSTHKKLKQNEVLDGIDAEIEVITKEVGADTKGKSKMDDDDSLANGNKDASGSVLGSGDQAKSDFSYEFSDHDEDLLDDENYADSMSDYE MDDDDTNVYEDEYAKIQSQFDNVDLPTGVEVSMPWLKESADTVETPAVPNSHAQDFESLLSSSASVLASKGEPTSSSKVEEGGIEKFKDFKLFDMVEDHS DHHYNRTGEQAVPAKNWAKRIQEEWKILENNLPETIFVRVYESRMDLLRSVIVGPAGTPYHDGLFVFDCLFPPNYPNAPPLVYYYSGGLRLNPNLYACGK VCLSLLGTWSGDKNEKWIAGKSTMLQVLVSIQALILNTQPYYNEPGYANQTGPAGLRKSREYSETVFILSLKTMMYTLRRPPKHFEILVKGHFQEVAHNI LIACKAYAEGREVGRIMVKDGVADVSNAEKNGSPDFKGEVKKMIDILINTFSRFGSIDCERFRTSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	0	1
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	2.2	0.9177
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10039831 [exp]	4.9	0.8846
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	5.5	0.9133
AT2G32970			unknown protein		Lus10035309 [exp]	7.4	0.8988
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	9.2	0.8901
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10041998 [exp]	10.2	0.8932
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10028744 [exp]	11.3	0.8891
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10040529 [exp]	11.5	0.8873
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	12.0	0.8925
AT4G37440			unknown protein		Lus10001409 [exp]	14.8	0.8907

Compare expression of checked genes

Lus10018596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.