Plant FIBer expression Database

Lus10018597 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28310 154 / 2e-47 unknown protein
AT1G52270 66 / 4e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039832
[exp]
299 / 1e-104 AT4G28310 156 / 2e-48 unknown protein
Lus10033688
[exp]
209 / 4e-69 AT4G28310 156 / 3e-48 unknown protein
Lus10031649
[exp]
202 / 2e-66 AT4G28310 149 / 2e-45 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130700
[exp]
166 / 8e-52 AT4G28310 120 / 9e-34 unknown protein
PFAM info
Representative CDS sequence
>Lus10018597 pacid=23180503 polypeptide=Lus10018597 locus=Lus10018597.g ID=Lus10018597.BGIv1.0 annot-version=v1.0
ATGGTGGTAACTCTGGGTCCTGGGAAATTCTACGGCAGCAGCCTCCCGCGCCCGCGCTTCTTCGACAACGTAACCTTCAACTCGGAGCGGGTCGATCCAC
CGCTCTCCGTCATGGATCCTTTTCTCTCCTGGGCTCGTGAGGCTCACTGGTCCATGGGAGGTCTCAGCACCGGCCGCCTCCGCCTCCAGGGCCGGATCGA
AGGGAACGTCGATCGGCTGCGCAAGTCCAGAGAGAAGCAGACCGGAAATACTCCACAGAAGCAGAAGAATCGGGTCACGAAAGGCGATGAACAAAGGGAT
GATGGCTCTGTTTCTCCTCCGGCGCCGAGAGTGGCGAAAAAGAGGAAGTCCATGGATCTGTTCGAAGAAGAAGAAAGGAAATGTCCGGCGAGGAAATTGG
TTGGTGAGTTTGAGAAGGTTGCGGAATTGGAATCCGATTTGGTTCGAAGGAAGACGAGGATTAGCAATCGGATCAGTGATCCAGTGATGAAGACGAAGTT
GAAGAAGCGGTTGAGGAAAGTTGGGGAAGAGGGTGGAGTTAGGAGTTCGCCTAGGTTGGCTAAGGAGAACTCAGTTGAGATTGTTTGA
AA sequence
>Lus10018597 pacid=23180503 polypeptide=Lus10018597 locus=Lus10018597.g ID=Lus10018597.BGIv1.0 annot-version=v1.0
MVVTLGPGKFYGSSLPRPRFFDNVTFNSERVDPPLSVMDPFLSWAREAHWSMGGLSTGRLRLQGRIEGNVDRLRKSREKQTGNTPQKQKNRVTKGDEQRD
DGSVSPPAPRVAKKRKSMDLFEEEERKCPARKLVGEFEKVAELESDLVRRKTRISNRISDPVMKTKLKKRLRKVGEEGGVRSSPRLAKENSVEIV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28310 unknown protein Lus10018597
[exp]
0 1
AT4G28310 unknown protein Lus10031649
[exp]
1.0 0.9476
AT5G43250 CCAAT NF-YC13 "nuclear factor Y, subunit C13... Lus10030657
[exp]
1.7 0.9412
AT3G02820 zinc knuckle (CCHC-type) famil... Lus10030564
[exp]
2.8 0.9449
AT5G52220 unknown protein Lus10038870
[exp]
4.0 0.9088
AT4G18590 Nucleic acid-binding, OB-fold-... Lus10014210
[exp]
7.6 0.8777
AT5G44500 Small nuclear ribonucleoprotei... Lus10038421
[exp]
9.2 0.9056
AT5G41970 Metal-dependent protein hydrol... Lus10000877
[exp]
9.5 0.8976
AT4G18590 Nucleic acid-binding, OB-fold-... Lus10014209
[exp]
10.8 0.8928
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10005891
[exp]
12.2 0.8886
AT3G54400 Eukaryotic aspartyl protease f... Lus10024148
[exp]
12.4 0.8907

Lus10018597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.