Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20680 627 / 0 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 610 / 0 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT5G01930 399 / 1e-136 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT5G66460 366 / 8e-124 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 344 / 2e-115 Glycosyl hydrolase superfamily protein (.1) AT3G10900 342 / 1e-114 Glycosyl hydrolase superfamily protein (.1) AT1G02310 332 / 6e-111 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 254 / 1e-81 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039833 [exp] 886 / 0 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 759 / 0 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 747 / 0 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10027329 [exp] 419 / 3e-144 AT2G20680 438 / 8e-152 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039032 [exp] 412 / 1e-141 AT2G20680 433 / 8e-150 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 408 / 6e-140 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 377 / 7e-128 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 368 / 3e-121 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 341 / 2e-113 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130400 [exp] 673 / 0 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 421 / 2e-144 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 394 / 4e-134 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 391 / 3e-132 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 370 / 3e-125 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 360 / 2e-121 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 349 / 2e-117 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 328 / 4e-109 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 221 / 3e-70 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 197 / 3e-59 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10018598 pacid=23180422 polypeptide=Lus10018598 locus=Lus10018598.g ID=Lus10018598.BGIv1.0 annot-version=v1.0 ATGGGAGGTACGGCTCCGTGCATCCCAATTCTGGGGGTAGCATCGTGTGTTATCTTCATCTATCTATCATTTGGCAACACGTGGCCGATAGGTTTCCTGC CAAAGGCGCCAGCTTGGAGCTTTGTGAAGAGGAATGGGACTGGATTTGTGTTGGATGGGAGACCCTTCTATGTGAACGGGTGGAATTCTTATTGGTTGAT GGAGCATTCAGCTGATGATCAGAGGAGACACAAGACTATTAGAATGTTGCAGGTTGGTTCCAAGATGGGTCTCACCGTGTGTAGAACTTGGGCGTTCAAT GATGGCGGCCGTGATGCCCTCCAGGTGTCTCCTGGCCAGTTTGAGGAAAGGGTTTTCAAGGCTTTGGACCATGTCATTGCAGAAGCAAGAGCACACAAAG TGAGACTAATCCTGAGTTTAGTCAACAACTTGAAAGCGTACGGTGGTAAAGATCGGTACGTAAGGTGGGCGTGGGAGGAAGGCATTGGCTTGAGTGCTTC TAATGATTCGTTCTTCTATGATCCATCCATCAAAAAGTACTTCAAGCACTATTTGCAGACCGTTCTTACGAGGAAGAATACTGTGACGGGAGTCGAGTAC AGGAACGATCCCACCATATTCGCCTGGGAATTGATGAACGAACCCCGGTGCATGACCGATCCTTCCGGAGACACTCTCCAAGATTGGACTGAGGAAATGT CGGCCTTTGTGAAGTCGATTGACAACAATCATCTATTAACGGTGGGGCTGGAAGGGTTCTATGGCCCGAAAAACCCGAAAAGATTGACTGTGAATCCGGC AAATTGGGCAGAAGAGCTTGGATCGGATTTCATACGCAACTCGAAAGTCGTGCACCTTGATTTCGCATCGGTTCACATATACCCTGATCATTGGGTTGCT CACCAATCATTCGAAGACAAACTGATATTCGTCTCCAAGTGGATGCGGTCGCACATCGAAGACGGCCACAAAGAGCTAAACAAGCCGGTCCTCTTCACCG AATTCGGGCTCTCCAACATGAACAAGGACTTCCAGCCGTCCCAGCGCGACTGGCTCTACAAGACGGTCTATGACATCATATACAAATCCGCAAAGAGAAA GCATTCCGGTGCCGGTGCCATGATGTGGCAGCTCTTTGTCAACGACATGGAAGACAGCAACGATGATTTCGGCATCATGCCGTGGGAGAGAGCCTCGATG TACAAGCTGATCACCGAGCAATCCTGCAAGTTGGCGAAATTGCGAGGCGCCATTGACGAGAATTGGAATATGAAAGAGTTGTGCCTTCCGAAACAGTGA
AA sequence Show only first row Show all	>Lus10018598 pacid=23180422 polypeptide=Lus10018598 locus=Lus10018598.g ID=Lus10018598.BGIv1.0 annot-version=v1.0 MGGTAPCIPILGVASCVIFIYLSFGNTWPIGFLPKAPAWSFVKRNGTGFVLDGRPFYVNGWNSYWLMEHSADDQRRHKTIRMLQVGSKMGLTVCRTWAFN DGGRDALQVSPGQFEERVFKALDHVIAEARAHKVRLILSLVNNLKAYGGKDRYVRWAWEEGIGLSASNDSFFYDPSIKKYFKHYLQTVLTRKNTVTGVEY RNDPTIFAWELMNEPRCMTDPSGDTLQDWTEEMSAFVKSIDNNHLLTVGLEGFYGPKNPKRLTVNPANWAEELGSDFIRNSKVVHLDFASVHIYPDHWVA HQSFEDKLIFVSKWMRSHIEDGHKELNKPVLFTEFGLSNMNKDFQPSQRDWLYKTVYDIIYKSAKRKHSGAGAMMWQLFVNDMEDSNDDFGIMPWERASM YKLITEQSCKLAKLRGAIDENWNMKELCLPKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10018598 [exp]	0	1
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	1.0	0.9582
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	1.4	0.9300
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	3.9	0.9110
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	4.5	0.8985
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	5.5	0.8951
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	6.6	0.9059
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	6.7	0.8881
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	8.9	0.8844
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	9.5	0.8908
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10018211 [exp]	10.1	0.8691

Compare expression of checked genes

Lus10018598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.