Plant FIBer expression Database

Lus10018599 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03600 117 / 1e-33 unknown protein
AT1G03730 116 / 3e-33 unknown protein
AT4G28330 81 / 1e-19 unknown protein
AT4G28340 76 / 2e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039834
[exp]
171 / 9e-55 AT4G03600 201 / 7e-67 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130300
[exp]
137 / 2e-41 AT1G03730 179 / 3e-58 unknown protein
PFAM info
Representative CDS sequence
>Lus10018599 pacid=23180442 polypeptide=Lus10018599 locus=Lus10018599.g ID=Lus10018599.BGIv1.0 annot-version=v1.0
ATGGACCAAGACGATGAACCAGAGCCACTGGGTCCATCTCCGTCTCAAGCTCCATCTCCAGCTCAGCCGCCGTCGACGACGTACAGCTTAGTAATCCGAA
TCATGAGCAAGCGACGGACCTGGGTGTTCCTCTTCGTTCTCGTCTACTCGATCCTCCTCTCTTCCTCGTGGAACCTCCTCAAGTCCATCCTCTCATGGTA
CTACAGCCAGCTGCAGAATCAGCAATCATCGGCCTCATCGGCGTCGGGATGGCCGGCGGTGTATGCGTCGGTGCTGCTGGGGGCGGTGTTCGGGGTGCTG
GCGATGGCGGCGGCGCTGGCGGTAGCGGTGCCGGCGACGGTGGTGATATGGATAACGGTGGTGGTGCTGCTGGCGTTCTTCGGGAAGCCGAGGAAGGTTC
TGGTGGTGGAAGGGAGGAAGATTACTAGGGAGATTTTGGGGTTCGTGGTTAAGATTCTGTTGAAGGAAGGGAATGCGGTGGCGGCGGTTTGTGCTGTTTT
GGGGTACTTTGTTCTTGTGCGGCGACGGAGTGGTGACGTGGACTGA
AA sequence
>Lus10018599 pacid=23180442 polypeptide=Lus10018599 locus=Lus10018599.g ID=Lus10018599.BGIv1.0 annot-version=v1.0
MDQDDEPEPLGPSPSQAPSPAQPPSTTYSLVIRIMSKRRTWVFLFVLVYSILLSSSWNLLKSILSWYYSQLQNQQSSASSASGWPAVYASVLLGAVFGVL
AMAAALAVAVPATVVIWITVVVLLAFFGKPRKVLVVEGRKITREILGFVVKILLKEGNAVAAVCAVLGYFVLVRRRSGDVD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03600 unknown protein Lus10018599
[exp]
0 1
AT4G03600 unknown protein Lus10039834
[exp]
1.0 0.9411
AT1G64450 Glycine-rich protein family (.... Lus10003189
[exp]
4.2 0.8727
AT4G24930 thylakoid lumenal 17.9 kDa pro... Lus10007492
[exp]
6.2 0.8759
AT4G05400 copper ion binding (.1.2) Lus10035454
[exp]
6.9 0.8168
AT1G61667 Protein of unknown function, D... Lus10020075
[exp]
6.9 0.8507
AT5G56760 SAT-52, AtSerat... SERINE ACETYLTRANSFERASE 52, s... Lus10008567
[exp]
8.0 0.8457
AT5G46720 AIG2-like (avirulence induced ... Lus10034712
[exp]
9.5 0.8420
AT1G49780 PUB26 plant U-box 26 (.1) Lus10019842
[exp]
9.9 0.8483
AT4G38430 ATROPGEF1, ROPG... rho guanyl-nucleotide exchange... Lus10021234
[exp]
11.2 0.8329
AT1G55805 BolA-like family protein (.1) Lus10002318
[exp]
11.2 0.8209

Lus10018599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.