Plant FIBer expression Database

Lus10018600 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53035 166 / 1e-53 unknown protein
AT3G15358 160 / 1e-51 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039835
[exp]
269 / 4e-94 AT1G53035 172 / 7e-56 unknown protein
Lus10015439
[exp]
176 / 2e-57 AT3G15358 190 / 3e-63 unknown protein
Lus10011176
[exp]
176 / 3e-57 AT3G15358 191 / 1e-63 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130100
[exp]
209 / 1e-70 AT1G53035 169 / 9e-55 unknown protein
Potri.001G399900
[exp]
181 / 2e-59 AT1G53035 182 / 6e-60 unknown protein
Potri.011G052900
[exp]
176 / 1e-57 AT3G15358 159 / 7e-51 unknown protein
Potri.004G044000
[exp]
176 / 1e-57 AT1G53035 182 / 4e-60 unknown protein
Potri.011G119200
[exp]
172 / 4e-56 AT1G53035 172 / 4e-56 unknown protein
PFAM info
Representative CDS sequence
>Lus10018600 pacid=23180380 polypeptide=Lus10018600 locus=Lus10018600.g ID=Lus10018600.BGIv1.0 annot-version=v1.0
ATGCCATCTTCATCATCATCCATGTTCTTCACGATCTGCATTCTGCACTCGACGATCGCCGTCGCGTGCGGAATCTCGATCATGTTCTGCCTCGAGGAGA
TCAGCTCGCTGGGCCACGGAACCAAAACGGCCGAGAAGTTGTTACTCGGTTCGACCCCGCACGACCGTTTGTTGATCGAGACATCCTACTCGTTCGCAGG
GCTGCTGCTCTGTTCGGTCGGGTCTCTGGTTTTCATGGTCGGGTTCGTGAATGATAGGGAGTTTCAGAGCTTTTTCGCGAAAGGGTGCGTGGTGCTTCAT
GTCGCGATGGCGGTTTGGAGAGTGTGGTTCGAGCGGAGGGTTGAGGATCTGGCTTGGGACTGGCCGAAGCAGGTTACTGGTGATGTTTTGTTGGGGAGTT
CTTGGGGGTTCTTCTTGGTTTACAATCGGAGGGAAATGTATGATTAG
AA sequence
>Lus10018600 pacid=23180380 polypeptide=Lus10018600 locus=Lus10018600.g ID=Lus10018600.BGIv1.0 annot-version=v1.0
MPSSSSSMFFTICILHSTIAVACGISIMFCLEEISSLGHGTKTAEKLLLGSTPHDRLLIETSYSFAGLLLCSVGSLVFMVGFVNDREFQSFFAKGCVVLH
VAMAVWRVWFERRVEDLAWDWPKQVTGDVLLGSSWGFFLVYNRREMYD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G53035 unknown protein Lus10018600
[exp]
0 1
AT4G04900 RIC10 ROP-interactive CRIB motif-con... Lus10018362
[exp]
1.7 0.8236
AT5G44120 ATCRA1, CRU1, C... CRUCIFERINA, RmlC-like cupins ... Lus10022927
[exp]
1.7 0.7846
AT2G35760 Uncharacterised protein family... Lus10039060
[exp]
4.5 0.7947
AT2G14045 unknown protein Lus10042548
[exp]
4.9 0.7672
AT3G61880 CYP78A9 cytochrome p450 78a9 (.1.2) Lus10017334
[exp]
5.3 0.7582
AT1G68330 unknown protein Lus10041430
[exp]
6.8 0.7225
AT1G35180 TRAM, LAG1 and CLN8 (TLC) lipi... Lus10033194
[exp]
9.9 0.7412
AT3G23510 Cyclopropane-fatty-acyl-phosph... Lus10027378
[exp]
10.0 0.7429
AT1G15940 Tudor/PWWP/MBT superfamily pro... Lus10030133
[exp]
13.4 0.7764
AT3G06070 unknown protein Lus10010508
[exp]
18.8 0.7717

Lus10018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.