Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 623 / 0 Protein kinase superfamily protein (.1) AT1G03740 587 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 581 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G71530 530 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 525 / 3e-180 Protein kinase superfamily protein (.1) AT1G54610 519 / 2e-178 Protein kinase superfamily protein (.1.2.3) AT1G09600 504 / 1e-170 Protein kinase superfamily protein (.1) AT5G50860 499 / 2e-170 Protein kinase superfamily protein (.1) AT1G74330 500 / 3e-169 Protein kinase superfamily protein (.1.2) AT3G05050 491 / 5e-167 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039836 [exp] 1140 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 939 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 920 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 613 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 580 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 546 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 543 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 542 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 530 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130000 [exp] 802 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 657 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 648 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 548 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 540 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 535 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 523 / 1e-179 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 523 / 2e-179 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 523 / 3e-178 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 520 / 2e-177 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018601 pacid=23180443 polypeptide=Lus10018601 locus=Lus10018601.g ID=Lus10018601.BGIv1.0 annot-version=v1.0 ATGGGGTGTATTTCTTCCAAAGAAGGGAGCCCTAGGGAGAGGCAGTCGGCATCACGTAGGGTTGCTCATGTGAATACTACGTTGGGGAGTAGTAGTAGGG ATGAAGGGATTCGGTCAAATGGCGGTGAAGTGAAAGTTACGTTGATTGAGAAGAAGACGACGAGTCGTCATGGTTCGATTAGGTCTCACAGTGATCAGAT GGTGTTGAGATCATCATCAAGGGAGTATCAGACTGAGAAGAGACGTGATTCTGCTAGTGTTGTTGCTACTGCTTATTCGAGAAGTGAGAGGAAATCTGAT ATAACGGATTTCAGTGATCCAGCTTGGGGGAAGGTTCCCAAGAATTTGGAAGCTGAGCAGGTTGCTGCTGGTTGGCCTGCTTGGCTTGTCTCGGTCGCTG GCGAATCGATCAAGGGATGGATTCCGAGGAAAGCTAGCTCGTTTGAGAAGCTCGATAGAATTGGCCAGGGAACGTATAGCAGTGTATACAAAGCTCGTGA CATTACTCGTGAGAAGATTGTCGCTCTGAAGAAAGTTCGGTTTGATAATAACGATGCGGATAGTATCAAGTTCATGGCGCGCGAGATTCTCATTCTGCGG AAGCTGGATCATCCGAATGTGATAAAGCTAGAAGGATTAATAACTTCACCAACTTCGTCTACTTTGTACCTTATATTTGAATACATGGAGCATGATTTAA CAGGACTTGCTTCAATACCAGGGGTCAAGTTCACTGAATCTCAGATGAAGTGTTACATGAAGCAACTTTTAAGTGGACTCGATCATTGTCACAGTCGCGG TGTTCTTCACCGTGACATCAAGGGCTCGAACCTTCTAATTGACAACAATGGTGTTCTGAAAATTGCCGACTTTGGCCTGGCAAGCTTCTTTGATCCGAAA AGTAGTGCGCAGCTGACTAGTCGTGTAGTGACTCTTTGGTATAGAGCGCCTGAACTCTTACTTGGGGCGTGTAGATATGGAGTTGCTGTGGATTTGTGGA GCAGTGGCTGCATACTTGGTGAATTGCATTCCGGAAAGCCCATCTTACCTGGACGAACAGAGGTTGAGCAACTGCATAAAATCTTCAAGCTATGTGGCTC GCCGTCTGAGGATTACTGGTTAAAAACTAAACTACATCGTTCTTCTGTAATAAAGCCTCAAAGACCGTACAAAAGATGCGTTGAAGAAACGTTCAAGGAC TTCCCTGCTCCAACTCTCGAGCTTTTGGAGACCTTACTATCGATCGATCCCGGTCAGAGAGGGAATGCTGCTTTAGTTCTGGAGAGTGAGTACTTCACCA CAAGGCCGTTTGCTTGCGATCCTTCAAGTTTGCCCAAGTATCCTCCAAGCAAAGAAATCGATGCTAAAAAGCGAGATGAAGAAGCTCGAAGACAAAAGCA AGCTGCTGCAGCCATGTGGAATGGACCAAATGAATCTGTGCCTATCAAGGGACCTGACGTTATAGCCTACGGATCCACCACACAGGCAAGTCAACATTCC TATTCGAAAGGCGAGATGTCGCAATCGAGCAAGGACAATAAAAACTACTCTGGCCTCCTGGTTCAACCTTCTAAGCAAATCCAAGCTGTAATGGAGGGAA GAAAGAGCTACATGGACAACCACCAACGTAGAAAAGTCACACATTCCGGGCCACTGGTCAACGGTTCCGGCTGGACCAAGTCCAGTCGCAATCGTGATAA TCTGGCAACCTCTGGGATGGTTGCAGCCCGGATTTCGTTGCCTCAAGATCGTCAGGGAAAACCCAGCACTTCGCAGCCACAATCTTTAAACCGACCATCG GAGGACCGAAAGGGACTGGATTCTTCCAAGAGTAACAAGATCTACGTGTCCGGTCCGCTACTAGTTCCGTCCAGCAACGTCGAACAAATGCTGAAAGACC ACAACCGTCGGATACAGGAATTCGCTCGGAGGCGGATCGACCAGTCGAAGCTCGGGAAAGCAGAGGTTCCAGTGAGGTAG
AA sequence Show only first row Show all	>Lus10018601 pacid=23180443 polypeptide=Lus10018601 locus=Lus10018601.g ID=Lus10018601.BGIv1.0 annot-version=v1.0 MGCISSKEGSPRERQSASRRVAHVNTTLGSSSRDEGIRSNGGEVKVTLIEKKTTSRHGSIRSHSDQMVLRSSSREYQTEKRRDSASVVATAYSRSERKSD ITDFSDPAWGKVPKNLEAEQVAAGWPAWLVSVAGESIKGWIPRKASSFEKLDRIGQGTYSSVYKARDITREKIVALKKVRFDNNDADSIKFMAREILILR KLDHPNVIKLEGLITSPTSSTLYLIFEYMEHDLTGLASIPGVKFTESQMKCYMKQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPK SSAQLTSRVVTLWYRAPELLLGACRYGVAVDLWSSGCILGELHSGKPILPGRTEVEQLHKIFKLCGSPSEDYWLKTKLHRSSVIKPQRPYKRCVEETFKD FPAPTLELLETLLSIDPGQRGNAALVLESEYFTTRPFACDPSSLPKYPPSKEIDAKKRDEEARRQKQAAAAMWNGPNESVPIKGPDVIAYGSTTQASQHS YSKGEMSQSSKDNKNYSGLLVQPSKQIQAVMEGRKSYMDNHQRRKVTHSGPLVNGSGWTKSSRNRDNLATSGMVAARISLPQDRQGKPSTSQPQSLNRPS EDRKGLDSSKSNKIYVSGPLLVPSSNVEQMLKDHNRRIQEFARRRIDQSKLGKAEVPVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53050			Protein kinase superfamily pro...		Lus10018601 [exp]	0	1
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041644 [exp]	3.7	0.9656
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	6.6	0.9755
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	7.2	0.9769
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10032885 [exp]	8.5	0.9721
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	12.8	0.9747
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	13.0	0.9717
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	16.4	0.9732
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	17.0	0.9715
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	17.9	0.9725
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10014105 [exp]	18.2	0.9663

Compare expression of checked genes

Lus10018601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.