Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04960 549 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G28350 541 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 374 / 7e-120 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 372 / 3e-119 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 353 / 4e-112 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 352 / 1e-111 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 350 / 5e-111 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 348 / 2e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 348 / 7e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 344 / 1e-108 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025441 [exp] 568 / 0 AT4G04960 763 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10015313 [exp] 553 / 0 AT4G04960 761 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 411 / 4e-134 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 383 / 3e-123 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 383 / 5e-123 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 382 / 8e-123 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 381 / 1e-122 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 379 / 1e-121 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 379 / 2e-121 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G044200 [exp] 570 / 0 AT4G04960 756 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G053100 [exp] 562 / 0 AT4G04960 735 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G053200 [exp] 551 / 0 AT4G04960 716 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 386 / 1e-124 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 385 / 2e-124 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 384 / 6e-124 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.009G035500 [exp] 382 / 6e-123 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 380 / 4e-122 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 376 / 7e-121 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 375 / 2e-120 AT2G37710 801 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10018602 pacid=23180384 polypeptide=Lus10018602 locus=Lus10018602.g ID=Lus10018602.BGIv1.0 annot-version=v1.0 ATGTCTCCAAAACAGAGGAATCCCTTCTTCATTCTCCTTCTCCTCCAAATCCAATCCTTCTTCTTCACCCCATCTTCCTCCGTCGACTTCATCTACAACT CCAACTTCACCTCCACCAACATCCTCACCTTCGGAAACGCCACCCTTGACCAGTCGTCGCCGTCGTCGCCGTCAATCCTCACCATCACCGAATCCGTACC GTTCTCCCTCGGCAGAGCATTCTACCCTAATCCAATCCCCACCACAGCACAAGAGAAAATCCGTGATTTCCACACATCGTTCATCTTCTCGATCGTCCCG CCGGCGAGGCCGCTGCTGCCGGGGCATGGATTGGCGTTCATGTTCTCCCCCGTGGCGGGGATTCGAGGGGCGATTTCGTCCCAGCATATGGGTTTGTTCA ATTTGAGCAACGACGGGAGTCCTGGGAATAGGATTGTCGCTGTGGAGTTTGATGTTTTCAGGAACCAGGAGTTTAACGATTTGAATGATAATCATGTCGG AGTCGACGTCAACTCGTTGACCTCTGTTTTTCAGAGGAGAGCTGGAGTTTGGAGTGATGATGGGGAATTTGCAGAGTTGAGGCTTAATAGTGGGGAGAAT TACCAGGTATGGATCGACTATGTTGGTTCGACGATCAATGTGACCATGGCTAGAGCAGGGGAGATCAGGCCGTCAAGGGCATTGATAAGCGAGTCTCTGA ATCTCACCGCCGTTTTCACCGGCGAAATGTTCGTTGGATTTGCCGCTGCTACAGGGCAATTGGTCGAGAGTCATCACATTTTGGGTTGGAGCTTTAGCAA TGACAATGCCTCCATTGGTGATGCCTTGGTCACTACAAACTTGCCTTCTTTCCTTCCTCCAGATGAAGAATCGCTCCTTGAATCGAAAGGGTTCGTAGCC GGGATAGTTGTTGGCGGGTTGAGTTTGCTACTCATTTTGGTGGTGGTAGTTGTGATTGTGTTGAGAAAGAGGGGAAGTACGGAGGAGGAGGACAAAGAGG AGATGGAAGATTGGGAAATGGAGTATTGGCCACATAGGATTGATTACCAAGTGATTCACGAAGCAACCAATGGTTTCAATGAAGAGAATGTGATTGGTAT TGGAGGGAATGGGAAGGTTTACAAAGGTAGATTCGTCGACGGAGGAGGAATCGAAGTAGCGGTGAAGAGGATCTCGATGCACAGCCAGCACGGTACAAGG GAGTTTCTGGCCGAGCTGTCGAGTTTGGGGAGGCTTAAGCATAGGAACTTGGTTGGCATCAAAGGTTGGTGCAAGAAGGAGAAAGGCAGCTTGATTTTGG TGTATGAGTACATGGAGAACGGTAGCTTGGACCACAAGTTATTCCAGCCTAGCATGGAGAAAGGAAGATTGGATAGCAAGTTATCATCTGTGTTGAGTTG GGAAGATAGGGTGAGGATCTTGAAAGATGCGGCGAGCGGGATATTGTATCTGCACCAAGGGTGGGAAGTTACGGTGTTGCATAGGGACATCAAGGCGAGC AATGTCTTGCTGGACAAGGAAATGAACGCGAGGCTAGGTGATTTCGGTTTGGCCAAGATGCACGAGCACGGGTTGCTGGCTACAACCACCACGCGGGTGG TTGGGACGGTAGGGTACATGGCGCCTGAAATGGTGACAACAGGGCGAGCATCGACTCAGACAGACGTGTATAGCTTCGGGGTGCTGATGCTAGAGGTTAT TTGCGGTAGGAGGCCGGTCGAGCAAGGGAAACCGAGCTTGGTCGATCAGGTGAGGAAGCTGATGGACAATGGGGATGTGAGATCTACGGTAGACAACAAG CTTAAGGCGAAAGGCGGTTATGGTGATGAGGAAGTAGAACGGATGCTTCAGTTGGGGTTGTTGTGTACGTACGGTGACCCAAAAGTCCGGCCAACGATGA GGCAGGTGGTGAAGGAAATGGAAAGAGTAGGGAACGGAGTGACCGAGAGCCGGTTGGATGATGATGCATTACAGGCTAACTTGCTTGATCGAGCCGGGAG GAATAACGGTCTATGGTCCGGTTATCATCATCACCGTGGTGGTTTCAATGGTGCGGAACACGTGACATTTGACCATGTTCTGCAATCCTTCCCTTCGTCT GTTTCCCTGCTCAGCTCGGACGCTATGGCTGAAGGTCGCTGA
AA sequence Show only first row Show all	>Lus10018602 pacid=23180384 polypeptide=Lus10018602 locus=Lus10018602.g ID=Lus10018602.BGIv1.0 annot-version=v1.0 MSPKQRNPFFILLLLQIQSFFFTPSSSVDFIYNSNFTSTNILTFGNATLDQSSPSSPSILTITESVPFSLGRAFYPNPIPTTAQEKIRDFHTSFIFSIVP PARPLLPGHGLAFMFSPVAGIRGAISSQHMGLFNLSNDGSPGNRIVAVEFDVFRNQEFNDLNDNHVGVDVNSLTSVFQRRAGVWSDDGEFAELRLNSGEN YQVWIDYVGSTINVTMARAGEIRPSRALISESLNLTAVFTGEMFVGFAAATGQLVESHHILGWSFSNDNASIGDALVTTNLPSFLPPDEESLLESKGFVA GIVVGGLSLLLILVVVVVIVLRKRGSTEEEDKEEMEDWEMEYWPHRIDYQVIHEATNGFNEENVIGIGGNGKVYKGRFVDGGGIEVAVKRISMHSQHGTR EFLAELSSLGRLKHRNLVGIKGWCKKEKGSLILVYEYMENGSLDHKLFQPSMEKGRLDSKLSSVLSWEDRVRILKDAASGILYLHQGWEVTVLHRDIKAS NVLLDKEMNARLGDFGLAKMHEHGLLATTTTRVVGTVGYMAPEMVTTGRASTQTDVYSFGVLMLEVICGRRPVEQGKPSLVDQVRKLMDNGDVRSTVDNK LKAKGGYGDEEVERMLQLGLLCTYGDPKVRPTMRQVVKEMERVGNGVTESRLDDDALQANLLDRAGRNNGLWSGYHHHRGGFNGAEHVTFDHVLQSFPSS VSLLSSDAMAEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	0	1
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	1.7	0.9600
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	7.7	0.8925
AT3G59080			Eukaryotic aspartyl protease f...		Lus10007335 [exp]	8.7	0.9183
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10011479 [exp]	10.7	0.9270
AT1G04700			PB1 domain-containing protein ...		Lus10003184 [exp]	12.4	0.8949
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10016601 [exp]	14.0	0.9376
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	16.8	0.9174
AT5G25930			Protein kinase family protein ...		Lus10006028 [exp]	17.7	0.8839
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	19.3	0.9086
AT2G36430			Plant protein of unknown funct...		Lus10035568 [exp]	21.8	0.9201

Compare expression of checked genes

Lus10018602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.