Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 102 / 8e-27 Protein of unknown function (DUF506) (.1) AT2G20670 87 / 8e-21 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039838 [exp] 238 / 5e-79 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10017723 [exp] 144 / 1e-42 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10033683 [exp] 139 / 2e-40 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10011174 [exp] 91 / 7e-22 AT4G32480 268 / 2e-89 Protein of unknown function (DUF506) (.1) Lus10015437 [exp] 82 / 1e-18 AT4G32480 260 / 6e-86 Protein of unknown function (DUF506) (.1) Lus10041046 [exp] 55 / 3e-09 AT4G32480 172 / 6e-52 Protein of unknown function (DUF506) (.1) Lus10006177 [exp] 54 / 6e-09 AT4G32480 171 / 1e-51 Protein of unknown function (DUF506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G129900 [exp] 140 / 3e-41 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 127 / 4e-36 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.004G044300 [exp] 101 / 5e-26 AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 84 / 9e-20 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.019G074400 [exp] 50 / 1e-07 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 47 / 2e-06 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.004G184700 [exp] 41 / 0.0002 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10018603 pacid=23180452 polypeptide=Lus10018603 locus=Lus10018603.g ID=Lus10018603.BGIv1.0 annot-version=v1.0 ATGGCGCTTTACAGATGGAACTCCGACGGGTTCTCCGACGAGTCAGCCAGCTTCTCCGATATCATTTTCGGCTTCTCCAATGAACCCAGAGACGACCATT CCTCCTCCAACAGCTCATGCACCAGCAGCTCCGGCGGCGGCGGCGGTTTCCCTGACGGCGCCACAGCGGACGAGAACAACTCCCGAAATTCAGAGGAGAA GAAGAAGTTCTGGGATTCCCAGAACGAAATCCTTCAGGCGACATTGTACAGAACTTCTTCTCTGGAAACCAAGATTCGAAAGTCAACGAGAGATTGCCTG ACCGAAATCGAGAATGTCGGACTGAGCTGCGTCTGCGGGAAAGCAGACGGCGCCGGCTGCCGGAATTTCCTCCGGAGGGAAGTGTCCATCAGGCTGAGGA GCAGAGGCTATAATTGCTCAATCTGCAAGTCTAAATGGAACGGAGGGCGAAACGGTCTGTTAGCTGGTAAATTGGGGAAAATTCAATCTGATTTGAATTT GATGATGTTAAATGGTATTCAATCTGATTTGAATTTTTTACCTTGA
AA sequence Show only first row Show all	>Lus10018603 pacid=23180452 polypeptide=Lus10018603 locus=Lus10018603.g ID=Lus10018603.BGIv1.0 annot-version=v1.0 MALYRWNSDGFSDESASFSDIIFGFSNEPRDDHSSSNSSCTSSSGGGGGFPDGATADENNSRNSEEKKKFWDSQNEILQATLYRTSSLETKIRKSTRDCL TEIENVGLSCVCGKADGAGCRNFLRREVSIRLRSRGYNCSICKSKWNGGRNGLLAGKLGKIQSDLNLMMLNGIQSDLNFLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32480			Protein of unknown function (D...		Lus10018603 [exp]	0	1
AT4G39140			RING/U-box superfamily protein...		Lus10008046 [exp]	8.9	0.8179
AT3G11760			unknown protein		Lus10013598 [exp]	9.5	0.7924
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	11.1	0.8073
AT1G70480			Domain of unknown function (DU...		Lus10013018 [exp]	19.1	0.7858
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	20.5	0.7260
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	21.2	0.7666
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10006930 [exp]	24.5	0.7091
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10006740 [exp]	25.7	0.7869
AT1G53903			Protein of unknown function (D...		Lus10003939 [exp]	28.7	0.7902
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10038506 [exp]	30.4	0.7680

Compare expression of checked genes

Lus10018603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.