Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18590 46 / 3e-06 AtENODL5 early nodulin-like protein 5 (.1) AT2G31050 46 / 4e-06 Cupredoxin superfamily protein (.1) AT5G53870 46 / 6e-06 AtENODL1 early nodulin-like protein 1 (.1) AT1G48940 45 / 6e-06 AtENODL6 early nodulin-like protein 6 (.1) AT5G57920 44 / 2e-05 AtENODL10 early nodulin-like protein 10 (.1) AT2G25060 44 / 3e-05 AtENODL14 early nodulin-like protein 14 (.1) AT5G20230 42 / 6e-05 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT4G31840 42 / 8e-05 AtENODL15 early nodulin-like protein 15 (.1) AT5G26330 42 / 0.0001 Cupredoxin superfamily protein (.1) AT1G79800 40 / 0.0003 AtENODL7 early nodulin-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039842 [exp] 150 / 3e-45 AT2G31050 88 / 2e-21 Cupredoxin superfamily protein (.1) Lus10032111 [exp] 56 / 1e-09 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10022318 [exp] 54 / 6e-09 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10014880 [exp] 53 / 2e-08 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10002615 [exp] 48 / 5e-07 AT5G26330 96 / 9e-26 Cupredoxin superfamily protein (.1) Lus10038098 [exp] 48 / 2e-06 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10019405 [exp] 48 / 2e-06 AT1G45063 107 / 3e-27 copper ion binding;electron carriers (.1.2) Lus10025752 [exp] 47 / 2e-06 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10027143 [exp] 47 / 3e-06 AT2G32300 137 / 9e-40 uclacyanin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243600 [exp] 82 / 5e-19 AT5G20230 73 / 6e-16 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G128800 [exp] 54 / 3e-09 AT2G25060 72 / 1e-16 early nodulin-like protein 14 (.1) Potri.018G128900 [exp] 53 / 6e-09 AT2G25060 78 / 1e-18 early nodulin-like protein 14 (.1) Potri.018G129000 [exp] 51 / 7e-08 AT3G20570 76 / 7e-17 early nodulin-like protein 9 (.1) Potri.001G338800 [exp] 50 / 1e-07 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.006G067200 [exp] 49 / 2e-07 AT5G20230 61 / 3e-12 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.013G030450 [exp] 49 / 2e-07 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.018G129400 [exp] 49 / 4e-07 AT5G20230 114 / 6e-32 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.013G030000 [exp] 49 / 4e-07 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.006G067400 [exp] 46 / 3e-06 AT5G20230 112 / 2e-31 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018606 pacid=23180449 polypeptide=Lus10018606 locus=Lus10018606.g ID=Lus10018606.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTTCGCATAAACCTGACAATAGCTGTAGCGATACTCAACTCGGTCGCCTCCGGCTTCCGCTACATGATCGGAGATTCCATCTGGGCAATCC CGCCTTCATCCGATTTCAACTGCAGCTGGTCCTTCTCCAATTCTTTCTATATTGGCGACTCTCTAGTTGTTCAACGTTGTGCAAGTGATGAGAAACGACT ACGAGAGCTGCACCGGCGACTCTCCTCTCAAGGTCTTCCGAACCAGTCCGCCGTCGTCGAGCTAACCTACAAGGGTGTTTTCTACTACATTTGCAACGTG TCAAACTACTGTGATCTTGGCCAGAAGGTCTTCATTCTTGTCCTCCAAAGACCTCCTTCCTCTGCACATCCCATATCATCACCACCACCCCCTTTCCATT CACCACTGCCACCACCGCAGTTGCCTTCAGGATCACCATCTTTGCCACCATCGACACCGACTCGGCCGGTGAATGATCCGTCTCCACCATCACCAGGTGT AGAGAACAACCATTCATCATCTCCAAGTTCCTATGCTAGTCGTAATAGCGTCTCACGTAGGGCGGGAATTTACTTCTCGTTTGTGCTGGTTATGGTTAGA ATCTTTTACCGTGATATAGTATAG
AA sequence Show only first row Show all	>Lus10018606 pacid=23180449 polypeptide=Lus10018606 locus=Lus10018606.g ID=Lus10018606.BGIv1.0 annot-version=v1.0 MASLRINLTIAVAILNSVASGFRYMIGDSIWAIPPSSDFNCSWSFSNSFYIGDSLVVQRCASDEKRLRELHRRLSSQGLPNQSAVVELTYKGVFYYICNV SNYCDLGQKVFILVLQRPPSSAHPISSPPPPFHSPLPPPQLPSGSPSLPPSTPTRPVNDPSPPSPGVENNHSSSPSSYASRNSVSRRAGIYFSFVLVMVR IFYRDIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10018606 [exp]	0	1
AT5G04460			RING/U-box superfamily protein...		Lus10038390 [exp]	6.8	0.8982
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	11.5	0.8603
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	11.7	0.8846
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	16.2	0.8143
AT1G78160		APUM7	pumilio 7 (.1)		Lus10041139 [exp]	17.9	0.8322
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	18.1	0.8872
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	20.7	0.8841
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	21.0	0.8728
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	24.8	0.8478
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	27.7	0.8243

Compare expression of checked genes

Lus10018606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.