Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03780 613 / 0 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT4G22860 114 / 1e-26 Cell cycle regulated microtubule associated protein (.1.2) AT5G44270 102 / 1e-23 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G11990 97 / 9e-21 Cell cycle regulated microtubule associated protein (.1) AT3G01015 68 / 1e-11 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G15510 67 / 2e-11 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G37478 47 / 1e-05 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G07170 47 / 3e-05 Cell cycle regulated microtubule associated protein (.1) AT5G62240 47 / 4e-05 Cell cycle regulated microtubule associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039844 [exp] 1027 / 0 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 605 / 0 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 570 / 0 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10006677 [exp] 97 / 8e-21 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10010706 [exp] 67 / 2e-11 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030650 [exp] 67 / 2e-11 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030836 [exp] 67 / 3e-11 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10007022 [exp] 52 / 1e-06 AT4G22860 209 / 3e-63 Cell cycle regulated microtubule associated protein (.1.2) Lus10007382 [exp] 49 / 2e-06 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013100 [exp] 667 / 0 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.007G138600 [exp] 621 / 0 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.003G117800 [exp] 143 / 4e-36 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 100 / 4e-22 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.017G092100 [exp] 66 / 5e-11 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 59 / 8e-09 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.012G130300 [exp] 49 / 1e-05 AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2) Potri.017G144061 [exp] 45 / 3e-05 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain PF12214 [flax] [poplar] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Lus10018608 pacid=23180366 polypeptide=Lus10018608 locus=Lus10018608.g ID=Lus10018608.BGIv1.0 annot-version=v1.0 ATGCTCAGTTTTTCCGACGTTGGTGAACAACACGCCGGCGGTGCAGGAGGAGGAGGATGCTCCACCGTTGCCGCTTGGTCATCTGTGGCGAAGCTGATCG ACGAGATTTACGAGTTCTCCGCCCCCAGGTTCTTTGACTTCACCAAGTCTGAATCGGAGGAAGATGCCAGGAAGGCCGAGCTCTGGTTTGACAACACTCT CAGTTACGCGCCTTCCCCTTTGATGCCCAGAATTAAGACCGGAAGATCATTCAAGGTAGAGAGCTTGTGTGACTTCAGTGAAGCGGACGAAATCACAAAG GCTGCTGAATCGTCAATTTCAACTTCTACAAAAGTCGAATCTTTCAAAGTCAAAGAGCACACCAAAGCTCAGGCCTACTGCACACCTCAGCAGCCATCAG TGAAGCCACAGAAGGGAAGTGTAGTGACAGACTCCAAGAAGCATCATCAATCGGCCAGGAATGTATCTAGTTTGGTTAAGAATCATCCATCAGTGCTTAA ATCGAAGAGTCAAGCACTATCCTCCCAAGCTAAAAGCGTCAAAGCTTCGACTGTAAAGAAAGGTAGTAGTGTAAGGATTCTTGCCGGAACTCCCACCTTT GCCCATGAGAATCAAGCCATAAAGCGGCAAAAGCTTGAAGATGGAAAATCCAGACAGATTCTCAACCTTAGACCACCACAGCCATTGACTCACAAGTCCA GGCTTGGTCTGTCAACTAGCCAATCCAACACAGGCTCTATGTCAGCTAACAAAGAGGATAGGAAGGTTTATGTTCGGGAACAAGCTGTACAAACACCTTT CGTTTCAACGGCAGAAATGATGAGGAAGTTTGAAACCAGTACCAGAGACTTGTCCTTCTTACCTCCCCCGGGAAAACCTAAACTGACACTGACAAGGCCT CAGGAGCCCGCTTTTGTAACTGCTCAGCGCATCCGACCGATCAAAGTAAAGAGTAGCGCTGAGCTTGAACAAGAGATGTTGGCTAAAATTCCCAAGTTCA AAGCTAGACCTGTAAACAAGAAGATTCTGGAAGCTCCAGCTCTACCAGCAATACCAAGAACCATTCCACAGCCACCTGAATTTCAGGAGTTCCATTTTGA GACAGCAGTAAGGGCCAATCATAATGCAGAATCAGCCTCAGTGGTCTCATCAGAAGCATCTCGTCAGGTCTGTGAATGGAGGCCGCTTCTGACCGAACCA AAAACTCCATTACTTCAGACCTCTCTGAGAGCTCGTCCGATAAAAGTGAAGAGTTATTTTGAATTGGAGGAAGAGGAGCTTGAAAAGATGCCTAAGTTCA AGGCCAAGCCTTTGAACAAAAAGATATTTGAGAGTAAAGGTGAATTGGGGATCTTCTGCAACACCAAGAAGCAAGTTACTGTACCTAAGGAGTTTCACTT TGCCAGAGATGAGAGAATTCCACCGGCTAATGCATTTGCTGATATGTTTGACAAGCTCTCGTTGAACTCAGGATCTCACGAAAATCAACTCCATCTTCCC AGAAACACAACACCAAATCCGTTCCATTTGCACACAGAGGAAAGAGGGGCAGAAAAAGAAAGGAGGCTAGCCACAGAACTTTTACGAAAGCAAATGGAGG ACGAACTTGCTAGAGTTCCAAAGGCTAATCCATACCCTTACACAACTGACTATCCAGTGGTTCCACCAAAGCCAACTCCGAAACCGAGCACAAGACCGGA GCCTTTCCAACTGGAAAGCCTTGCGAGACACGAAGAGGAAATGCAGAAAGAAATGGAGGAGAGACAGAGGAAGGAGTGGGAAGAGACTCAGATGAGAGTG TTCAAAGCACAACCAATCCTTAAAGAGGATCCGATTCCTGTACCGGAGAAGGTCCGGAGACCACTTACAGAAGTTCAACCAATCCACCTCCACGTCGATC ACCGCGCAGTTGACCGGGCGGAATTCGATCAAAAGGTGAAGGAAAAGGAAATGCTGTATAAACGATACAGAGAGGAAAGTGAAGCTGCAAAGATGATCGA GGAAGAGAAGGCAATGAAGCAGTTGAGGAGAACAATGGTTCCTCATGCTAGACCAGTCCCAAACTTTGAGCAGCCATTCTGCCCCAAGAAATCTTCGAAA GAAACCACGAGACCAAAGTCGCCGAGATTGCGGGTGCTTCGGAGGAGAGAAATGCAGCAGCAAAGGAACCACAACAGCAGCAGCTTCATGATGGCTATGG CTACAGCTTCGAGCCCTGCTTCGTGCATGCGGTGA
AA sequence Show only first row Show all	>Lus10018608 pacid=23180366 polypeptide=Lus10018608 locus=Lus10018608.g ID=Lus10018608.BGIv1.0 annot-version=v1.0 MLSFSDVGEQHAGGAGGGGCSTVAAWSSVAKLIDEIYEFSAPRFFDFTKSESEEDARKAELWFDNTLSYAPSPLMPRIKTGRSFKVESLCDFSEADEITK AAESSISTSTKVESFKVKEHTKAQAYCTPQQPSVKPQKGSVVTDSKKHHQSARNVSSLVKNHPSVLKSKSQALSSQAKSVKASTVKKGSSVRILAGTPTF AHENQAIKRQKLEDGKSRQILNLRPPQPLTHKSRLGLSTSQSNTGSMSANKEDRKVYVREQAVQTPFVSTAEMMRKFETSTRDLSFLPPPGKPKLTLTRP QEPAFVTAQRIRPIKVKSSAELEQEMLAKIPKFKARPVNKKILEAPALPAIPRTIPQPPEFQEFHFETAVRANHNAESASVVSSEASRQVCEWRPLLTEP KTPLLQTSLRARPIKVKSYFELEEEELEKMPKFKAKPLNKKIFESKGELGIFCNTKKQVTVPKEFHFARDERIPPANAFADMFDKLSLNSGSHENQLHLP RNTTPNPFHLHTEERGAEKERRLATELLRKQMEDELARVPKANPYPYTTDYPVVPPKPTPKPSTRPEPFQLESLARHEEEMQKEMEERQRKEWEETQMRV FKAQPILKEDPIPVPEKVRRPLTEVQPIHLHVDHRAVDRAEFDQKVKEKEMLYKRYREESEAAKMIEEEKAMKQLRRTMVPHARPVPNFEQPFCPKKSSK ETTRPKSPRLRVLRRREMQQQRNHNSSSFMMAMATASSPASCMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10018608 [exp]	0	1
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10039844 [exp]	1.0	0.9829
AT3G63430			unknown protein		Lus10024836 [exp]	2.4	0.9598
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	2.8	0.9680
AT3G17360		POK1	phragmoplast orienting kinesin...		Lus10017113 [exp]	4.0	0.9573
AT1G04030			unknown protein		Lus10008231 [exp]	8.8	0.9451
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	9.3	0.9253
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10029686 [exp]	10.2	0.9104
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	10.2	0.9560
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	10.4	0.9499
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	12.6	0.9436

Compare expression of checked genes

Lus10018608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.