Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15270 127 / 5e-37 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G53160 126 / 1e-36 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT2G33810 119 / 2e-34 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G69170 123 / 3e-33 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G02065 117 / 1e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G60030 120 / 2e-31 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT2G42200 117 / 4e-31 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT2G47070 117 / 2e-30 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G20980 115 / 1e-29 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G57920 110 / 8e-29 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039846 [exp] 249 / 1e-84 AT1G53160 129 / 8e-38 squamosa promoter binding protein-like 4 (.1.2) Lus10005548 [exp] 126 / 1e-36 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1) Lus10015421 [exp] 120 / 8e-35 AT2G33810 128 / 4e-39 squamosa promoter binding protein-like 3 (.1) Lus10013999 [exp] 120 / 1e-34 AT2G33810 128 / 6e-39 squamosa promoter binding protein-like 3 (.1) Lus10028181 [exp] 120 / 1e-32 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10042882 [exp] 117 / 3e-31 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10021034 [exp] 117 / 5e-31 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10021614 [exp] 117 / 6e-31 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021141 [exp] 118 / 8e-31 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138800 [exp] 162 / 3e-50 AT3G15270 140 / 4e-42 squamosa promoter binding protein-like 5 (.1) Potri.001G398200 [exp] 130 / 3e-38 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.011G116800 [exp] 130 / 1e-37 AT3G15270 159 / 5e-49 squamosa promoter binding protein-like 5 (.1) Potri.011G055900 [exp] 124 / 3e-36 AT2G33810 129 / 2e-39 squamosa promoter binding protein-like 3 (.1) Potri.004G046700 [exp] 123 / 1e-35 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.014G057700 [exp] 117 / 9e-32 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.002G142200 [exp] 117 / 1e-31 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.016G048500 [exp] 117 / 3e-31 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.002G142400 [exp] 117 / 6e-31 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.001G055900 [exp] 117 / 1e-30 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10018610 pacid=23180462 polypeptide=Lus10018610 locus=Lus10018610.g ID=Lus10018610.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGGGGAAAGGGAAGCAGAAGAGGACGATGGTTGTGAAGAAGGAATTCGATGACGACCCTGCCGACTCATCGTCTGATGAGTATGGCTCAG ATCAGTATCTTCATCAGCAGCAGGGGATGGGTTATTTCTTTGATGATGATGATTCGTCTGAGTCTTGTAAGAAGAAGAAACTAGTTATCGGTACTGGTAC TACTGCTACTGCTTCTTTCGCCGGCGGCGAGAGAAGGGTCGCCGGCGGCAGGTGCTGTCAGGCGGAGAAGTGCACGAACGATCTGAGTGTGGCGAAGGCG TACCACAGGAGGCATAGGGTGTGTGAGTACCATTCGAAAGCTCAGGTTGTGCTTGTTTCTGGGTTGAGGCAGAGGTTTTGCCAGCAATGCAGCAGATTCC ACGAGCTGCCGGAGTTCGACGACATGAAGAGGAGCTGCCGGCGGCGACTGGCGGGGCACAACGAGCGGAGAAGGAAGAATGCAGCAGCTGAATCTCATCC TCATCATCCTCCTCCCCATGAAGGATCGTCAGCCAGGAAAGAAGATACCATCATGTGTGATCCTAGGGAAAGGATCAAGATCGTCACCGCAGAGAATCCA AGTTACAAGCATTTCCAGATCAGATGA
AA sequence Show only first row Show all	>Lus10018610 pacid=23180462 polypeptide=Lus10018610 locus=Lus10018610.g ID=Lus10018610.BGIv1.0 annot-version=v1.0 MEEGGKGKQKRTMVVKKEFDDDPADSSSDEYGSDQYLHQQQGMGYFFDDDDSSESCKKKKLVIGTGTTATASFAGGERRVAGGRCCQAEKCTNDLSVAKA YHRRHRVCEYHSKAQVVLVSGLRQRFCQQCSRFHELPEFDDMKRSCRRRLAGHNERRRKNAAAESHPHHPPPHEGSSARKEDTIMCDPRERIKIVTAENP SYKHFQIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	0	1
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Lus10039846 [exp]	1.0	0.8773
AT1G50920			Nucleolar GTP-binding protein ...		Lus10039110 [exp]	3.9	0.7826
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10007983 [exp]	4.5	0.7845
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	4.5	0.7986
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	4.9	0.7964
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	9.2	0.7826
AT1G50920			Nucleolar GTP-binding protein ...		Lus10038748 [exp]	17.2	0.7377
AT2G33360			Protein of unknown function (D...		Lus10023729 [exp]	20.2	0.6850
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	20.2	0.7699
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10026691 [exp]	21.1	0.6397

Compare expression of checked genes

Lus10018610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.