Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13490 280 / 2e-94 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 271 / 6e-91 AAC1 ADP/ATP carrier 1 (.1.2) AT4G28390 263 / 7e-88 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G17400 194 / 7e-62 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G56450 118 / 4e-32 PM-ANT Mitochondrial substrate carrier family protein (.1) AT1G14560 76 / 2e-16 Mitochondrial substrate carrier family protein (.1) AT4G01100 72 / 9e-15 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G26180 69 / 7e-14 Mitochondrial substrate carrier family protein (.1) AT1G79900 66 / 8e-13 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT4G32400 65 / 3e-12 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039847 [exp] 315 / 2e-108 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10019701 [exp] 291 / 8e-99 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016418 [exp] 291 / 9e-99 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019702 [exp] 291 / 9e-99 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 291 / 9e-99 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 262 / 2e-87 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 260 / 8e-87 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10034658 [exp] 184 / 8e-58 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 182 / 3e-57 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G267800 [exp] 288 / 1e-97 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.009G062200 [exp] 287 / 3e-97 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.003G204600 [exp] 282 / 3e-95 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.017G012800 [exp] 280 / 2e-94 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.001G019400 [exp] 280 / 3e-94 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.007G139100 [exp] 277 / 2e-93 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.012G062500 [exp] 189 / 1e-59 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.006G227100 [exp] 118 / 4e-32 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 73 / 2e-15 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 73 / 3e-15 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10018612 pacid=23180464 polypeptide=Lus10018612 locus=Lus10018612.g ID=Lus10018612.BGIv1.0 annot-version=v1.0 ATGTCTGGTGGAGCTGCTGGTGCCTCTTCTCTTCTGTTCATGTACTCACTTGATGCCTCTTCTCTTCTGTTCATGTACTCACTTGATTATGCTCGAACAC TTTTGGCGAACGATGCTAAGGCAGCTAAACGGGGCGGTGGGAGGCAGTTTGATGGTTTGATTGACGTGTATAGGAAAACCATCAGAAGCGACGGGATTGC TGGTCTTTACCGTGGTTTCAACATATCTTGCGTTGGAATTATCGTCTACCGTGGACTCTACTTCGGCATGTACGACTCCCTTAAGCCCCTGCTTCTGGTT GGAGATTTGCAGGATAAACTCTTCCCAAGATTCTTGCTGGGATGGGTTATCACAAACGGATCCTGGTTAGCATCATACCCCATCGATACTGTCCGTAGAA GAATGATGATGACCTCAGGGGAAGCTGTCAAGTACAAGAGCTCCCTCGACGCGTTCAAACAGATCGTTAAGAACGAAGGCTCGAAGTCCCTCTTCAAAGG TGCGGGTGCCAACATCCTCCGTGCAGTTGCAGGCGCTGGTGTCCTAGCTGGCTACGATAAGCTGCAGCTGATCGTCTTTGGCAAGAAGTACTGA
AA sequence Show only first row Show all	>Lus10018612 pacid=23180464 polypeptide=Lus10018612 locus=Lus10018612.g ID=Lus10018612.BGIv1.0 annot-version=v1.0 MSGGAAGASSLLFMYSLDASSLLFMYSLDYARTLLANDAKAAKRGGGRQFDGLIDVYRKTIRSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPLLLV GDLQDKLFPRFLLGWVITNGSWLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVKNEGSKSLFKGAGANILRAVAGAGVLAGYDKLQLIVFGKKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10018612 [exp]	0	1
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10031516 [exp]	2.2	0.9273
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10018611 [exp]	2.8	0.9080
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	3.2	0.9006
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	7.4	0.9071
					Lus10001241 [exp]	8.5	0.9023
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	11.1	0.8870
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	12.1	0.9077
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	15.9	0.8985
AT5G10070			RNase L inhibitor protein-rela...		Lus10003856 [exp]	16.1	0.8825
AT1G09050			unknown protein		Lus10037506 [exp]	16.3	0.8946

Compare expression of checked genes

Lus10018612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.