Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20650 772 / 0 RING/U-box superfamily protein (.1.2) AT4G28370 764 / 0 RING/U-box superfamily protein (.1) AT4G12190 51 / 3e-08 RING/U-box superfamily protein (.1) AT2G44578 50 / 4e-07 RING/U-box superfamily protein (.1) AT4G05350 49 / 2e-06 RING/U-box superfamily protein (.1) AT1G74620 49 / 2e-06 RING/U-box superfamily protein (.1) AT2G01150 47 / 5e-06 RHA2B RING-H2 finger protein 2B (.1) AT3G19950 49 / 6e-06 RING/U-box superfamily protein (.1) AT5G47610 47 / 8e-06 RING/U-box superfamily protein (.1) AT2G44581 46 / 8e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039848 [exp] 959 / 0 AT2G20650 846 / 0.0 RING/U-box superfamily protein (.1.2) Lus10012819 [exp] 48 / 5e-06 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10040783 [exp] 49 / 6e-06 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10017383 [exp] 45 / 2e-05 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10010328 [exp] 44 / 2e-05 AT5G56340 94 / 6e-24 RING/U-box superfamily protein (.1) Lus10002637 [exp] 47 / 3e-05 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10023507 [exp] 47 / 3e-05 AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3) Lus10013397 [exp] 47 / 3e-05 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10020258 [exp] 47 / 3e-05 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012600 [exp] 834 / 0 AT2G20650 893 / 0.0 RING/U-box superfamily protein (.1.2) Potri.007G139300 [exp] 823 / 0 AT2G20650 867 / 0.0 RING/U-box superfamily protein (.1.2) Potri.011G119900 [exp] 56 / 4e-09 AT1G14200 60 / 9e-12 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 54 / 2e-08 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.001G400600 [exp] 52 / 1e-07 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.007G107000 [exp] 51 / 6e-07 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G118000 [exp] 50 / 1e-06 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G001500 [exp] 49 / 8e-06 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.008G058100 [exp] 49 / 8e-06 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G047100 [exp] 46 / 8e-06 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10018613 pacid=23180386 polypeptide=Lus10018613 locus=Lus10018613.g ID=Lus10018613.BGIv1.0 annot-version=v1.0 ATGGTTTCCAGGGAGTATTTGAGAGGTTTAGGGTTAGTGTATTGGGTTGGTTTCTTCTGTTTTTTTTGGGTTGTGGTTCTGGTTCGACCAGTGGTTGGAT TGAGGCCCTTGAGGGATCAGAGACAGTCATGGGGAGACGAGTGGCTATTTGTTAGAAAAGAAGAGAATGACTTGGGCCCTTTCTCTGCGTGGAACATTAC AGGAACTTACCGAGGGTCTTGGAAGTTCCTCGATTCTACAAACAGCTCTTCTAAGTTTCCAGATTTCAGGAACTCGAATGGCGATTCGGTTATCGAGTTG GTCACCACGCAGACGAAAATAACCGGGGTGCACTATGTCCAGGGTGTAATTATTTTCCATGACGTGTTTGATAACGAGCACAATGTTGGGGGTGCTCAAA TCAGGGTGGAAGGAGTTTATATATGGCCGTTTAGACAACTTCGAATGGTGGCTAGCAGTCGGAAAGAAGGAGAGTTTGGTCAGGAAGACGATTATATCTT GTCTAATCCGTATCATCTGCTTGGAGTTTTCTCTTCTCAGGTTTTTCAGGACTCTCCCAAGGAGAAGATATGGAGAAGGAAAAATTGCGGAGATCGCGAT CGTTACCACTTAGAGGGACTGATGGAGAGTCCTGCGGTGGACGATGATGGGGAATGCTTCTCCCCCTTGCTACTAAATGCTACTTCTGTAAACATTGAGG TCTACTACAACAAAGCAGTGAACTACACCTTGATGGTCACTTTTATGGAACATAGTAACACACAATCGGGAGCCGCCAAAGTTTCGATCTTGATGATCGG TCAGCAAGCCATCATGGATGCTTACCTTTGCCTTTTGCACCTGACTGCCGGAATCTTAGTCGAGTCCTTGTTCAATGCTTTTGCTACAGCTGCATTTTTC AAGTTCGTGGTATTTTCAATTTTCGAAATGCGATATCTTCTGGCCATATGGAAGGCAAGCCGGCCTGCCAGTAGCGGTGAAGGTTGGGAAGCGATGAGGC GCGAGCTTTCGGTTTTATATAGTCGATTTTATGGCATTCTTCTCGGGGGGATTCTGCTAATGTACGAGTTCCACAACTTCCTACGGCCGATTCTCCTCCT GATGTACTCATTCTGGATACCTCAGATCGTGACGAACGTGATTCGAGATTCGAGGAAGCCTCTGCATCCTTACTACGTCTTAGGCATGACGGTTACTCGG GTAGCGGTACCGCTGTATATATTCGGATGCCCTAACAACTTCATGCGGATCGAGCCGGACAAGACGTGGTGCACGTCTTTGGTTATGTTCGTTGGTTTGC AGGCCTCGGTTCTACTCCTTCAAAACTATCTCGGATCCCGATGGTTCATCCCTCGTCAGATCCTGCCGGAGAAATACAGCTACTTCAGGAAATTCGATCT CGAAGAAAGTCACGCGACAGATTGCGTAATATGCATGACATCGATCGATATGATGCAGCGTCCGAGCGATTGCATGGTAACGCCCTGCGATCATTTCTTC CACTCCGGTTGTCTACAAAGATGGATGGATATCAAGATGGAATGCCCAACCTGCCGGCGTCCACTGCCACCAGCGTAG
AA sequence Show only first row Show all	>Lus10018613 pacid=23180386 polypeptide=Lus10018613 locus=Lus10018613.g ID=Lus10018613.BGIv1.0 annot-version=v1.0 MVSREYLRGLGLVYWVGFFCFFWVVVLVRPVVGLRPLRDQRQSWGDEWLFVRKEENDLGPFSAWNITGTYRGSWKFLDSTNSSSKFPDFRNSNGDSVIEL VTTQTKITGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVASSRKEGEFGQEDDYILSNPYHLLGVFSSQVFQDSPKEKIWRRKNCGDRD RYHLEGLMESPAVDDDGECFSPLLLNATSVNIEVYYNKAVNYTLMVTFMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFF KFVVFSIFEMRYLLAIWKASRPASSGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHNFLRPILLLMYSFWIPQIVTNVIRDSRKPLHPYYVLGMTVTR VAVPLYIFGCPNNFMRIEPDKTWCTSLVMFVGLQASVLLLQNYLGSRWFIPRQILPEKYSYFRKFDLEESHATDCVICMTSIDMMQRPSDCMVTPCDHFF HSGCLQRWMDIKMECPTCRRPLPPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	0	1
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	2.4	0.9707
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10015265 [exp]	2.6	0.9727
AT1G68260			Thioesterase superfamily prote...		Lus10031959 [exp]	3.3	0.9454
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Lus10005861 [exp]	4.2	0.9474
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	4.9	0.9554
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	6.9	0.9666
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10006640 [exp]	7.7	0.9145
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	11.2	0.9512
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10012782 [exp]	12.2	0.9098
AT1G47330			CBS domain-containing protein ...		Lus10032715 [exp]	13.0	0.9048

Compare expression of checked genes

Lus10018613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.