Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02550 42 / 4e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039849 [exp] 184 / 6e-60 AT1G02550 46 / 3e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038294 [exp] 42 / 9e-05 ND 42 / 4e-04 Lus10025807 [exp] 42 / 0.0001 ND 39 / 0.002 Lus10025806 [exp] 42 / 0.0001 ND 40 / 0.002 Lus10038295 [exp] 41 / 0.0002 ND 37 / 0.005
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 50 / 9e-08 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G119400 [exp] 49 / 3e-07 AT1G02550 78 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 46 / 3e-06 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 43 / 2e-05 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10018615 pacid=23180509 polypeptide=Lus10018615 locus=Lus10018615.g ID=Lus10018615.BGIv1.0 annot-version=v1.0 ATGACGAAAAAGGGCGTCTTGGGGAGCGAAATCAACCCGGCCCTCCGCGAGATCTGCCTGGCCACCAAGACGCCGAACAAATGCTCCGACTACCTCGCTC CGATCGCCGTCGGCGCCGGCGGCACGTACCAGGACCCCGTGTCGATCCTCAACCTGGAGATCGAGCTCCTCTACAAGAAGGTGGAGAAGGCCGCCGAAGA GGCGGGGGAGATCGGGAAAAAGGGGTCCACCCCTGCTGATGTGGCGAAGGCGCTGACGTCTTGCGTGGAGGATTACAACAAGGCGAAGGATGACCTGGCG ATGGCTCTGTTGCAGTTTTCCGAGAAGAAGGACGCTGCCAGCGTGGATGGGAGTCTGACGTCGGCTGCCACGTGGGTTAAGAAATGCGACGCTGGGTTTA ATGGGAAGGGGGAGGAGAAGATGGAGAAGATGAATGTGAAGATTGTTGAGATGGCGGAGTTGGGGATTGAGATTTCCGATAAGTGGCTTAAGAAAGCTAA TTAA
AA sequence Show only first row Show all	>Lus10018615 pacid=23180509 polypeptide=Lus10018615 locus=Lus10018615.g ID=Lus10018615.BGIv1.0 annot-version=v1.0 MTKKGVLGSEINPALREICLATKTPNKCSDYLAPIAVGAGGTYQDPVSILNLEIELLYKKVEKAAEEAGEIGKKGSTPADVAKALTSCVEDYNKAKDDLA MALLQFSEKKDAASVDGSLTSAATWVKKCDAGFNGKGEEKMEKMNVKIVEMAELGIEISDKWLKKAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02550			Plant invertase/pectin methyle...		Lus10018615 [exp]	0	1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10010419 [exp]	8.0	0.8306
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10023509 [exp]	21.0	0.8187
AT3G08870			Concanavalin A-like lectin pro...		Lus10012509 [exp]	21.4	0.7663
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10022420 [exp]	31.2	0.8077
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10040391 [exp]	32.9	0.8007
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	33.2	0.7785
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023317 [exp]	36.7	0.7457
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	41.6	0.7935
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	41.9	0.7501
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10034292 [exp]	42.1	0.7800

Compare expression of checked genes

Lus10018615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.