Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28400 427 / 1e-152 Protein phosphatase 2C family protein (.1) AT2G20630 421 / 4e-150 PIA1 PP2C induced by AVRRPM1 (.1.2) AT3G15260 396 / 5e-140 Protein phosphatase 2C family protein (.1.2) AT1G22280 322 / 5e-111 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G34750 311 / 6e-107 Protein phosphatase 2C family protein (.1) AT1G78200 303 / 2e-103 Protein phosphatase 2C family protein (.1.2) AT2G34740 297 / 2e-100 Protein phosphatase 2C family protein (.1.2) AT4G31750 219 / 4e-70 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 222 / 1e-69 Protein phosphatase 2C family protein (.1) AT5G10740 218 / 3e-69 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039853 [exp] 582 / 0 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 347 / 2e-120 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 345 / 1e-119 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 334 / 1e-115 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 332 / 2e-114 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10009210 [exp] 313 / 2e-106 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2) Lus10005405 [exp] 303 / 1e-103 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10038455 [exp] 300 / 3e-102 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10033453 [exp] 299 / 4e-102 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013300 [exp] 461 / 7e-166 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 406 / 4e-144 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.011G116700 [exp] 397 / 2e-140 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.006G081400 [exp] 340 / 1e-117 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 336 / 3e-116 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 326 / 1e-112 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 326 / 1e-112 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 219 / 3e-70 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 216 / 4e-69 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 211 / 6e-67 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10018618 pacid=23180480 polypeptide=Lus10018618 locus=Lus10018618.g ID=Lus10018618.BGIv1.0 annot-version=v1.0 ATGACAGGCACTGGCAGAGAAATCCTCCACAAAATGAAGGTGAAGGCAGGACTATGTGCAACTGGATCCGAACCGGCGAAAGGCAAAGGCAAAGTGTACG ACCACATTACTTACGGCTCTCACATGGTGAAGGGGAAATCACACCACGCCATGGAAGACTATGTAGTCTCCGATCTCAAGCACGTAAACAACCACGAACT CGGTTTGTTCGCGATCTTCGATGGCCATTTAGGCCACGACGTCGCCAACTACTTGCAAAGCCACTTATTTGGCAACATCCTGAAAGAGAGTGACTTCTGG TCCGATACAGAAACTGCCATAAAGAATGCTTACATAAAGACGGATGCCGAAATACTCGAGAAAGCACTCACCTTGGGGAAAGGAGGGTCGACTGCCGTCA CGGCCATACTGATCGATGGATCGAAGCTTGTGGTGGCGAATGTTGGGGATTCTCGCGCTGTCATATGCAGGAATGGCGTGGCGAAACAGCTTTCGGTTGA TCACGAGCCTAGCAAGGAGAAGAGGATGATCGAGAGCCGCGGTGGATTCGTGTCCAATATTCCTGGGGATGTTCCGAGAGTTGATGGGCAGTTGGCGGTG GCGAGGGCGTTTGGGGATCGGAGCTTGAAGGTCCACCTTAGCTCGGAACCGGATGTGTCGGAGGAGACGGTTGATGATGAGGCCGAGTTCCTCATCCTGG CTAGTGACGGCGTATGGAAGGTGATGTCGAACCAAGAAGCAGTGGACTGCATCAAGACCACAAAGGACGCGAAGACGGCAGCAAATCGGGTGATCGAGGA GGCCCTTTCGAGGAAGAGCAAGGACGACATATCTTGCATAGTTGTGAGGTTCCAATGA
AA sequence Show only first row Show all	>Lus10018618 pacid=23180480 polypeptide=Lus10018618 locus=Lus10018618.g ID=Lus10018618.BGIv1.0 annot-version=v1.0 MTGTGREILHKMKVKAGLCATGSEPAKGKGKVYDHITYGSHMVKGKSHHAMEDYVVSDLKHVNNHELGLFAIFDGHLGHDVANYLQSHLFGNILKESDFW SDTETAIKNAYIKTDAEILEKALTLGKGGSTAVTAILIDGSKLVVANVGDSRAVICRNGVAKQLSVDHEPSKEKRMIESRGGFVSNIPGDVPRVDGQLAV ARAFGDRSLKVHLSSEPDVSEETVDDEAEFLILASDGVWKVMSNQEAVDCIKTTKDAKTAANRVIEEALSRKSKDDISCIVVRFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	0	1
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	2.0	0.9302
					Lus10015401 [exp]	2.8	0.9248
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10003387 [exp]	3.5	0.9254
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	4.5	0.9279
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	4.9	0.8993
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10007540 [exp]	5.5	0.9126
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	6.9	0.9170
AT3G50150			Plant protein of unknown funct...		Lus10039780 [exp]	7.2	0.8859
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Lus10011328 [exp]	7.5	0.9047
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10029605 [exp]	10.6	0.9145

Compare expression of checked genes

Lus10018618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.