Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44240 385 / 2e-127 ALA2 aminophospholipid ATPase 2 (.1.2) AT5G04930 141 / 2e-38 ALA1 aminophospholipid ATPase 1 (.1) AT1G59820 129 / 3e-34 ALA3 aminophospholipid ATPase 3 (.1) AT1G13210 120 / 3e-31 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G27870 119 / 6e-31 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 116 / 9e-30 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 115 / 1e-29 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 112 / 2e-28 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 111 / 4e-28 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 110 / 7e-28 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039854 [exp] 439 / 8e-159 AT5G44240 440 / 1e-147 aminophospholipid ATPase 2 (.1.2) Lus10033406 [exp] 145 / 1e-39 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10034872 [exp] 144 / 3e-39 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 136 / 9e-37 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028873 [exp] 135 / 3e-36 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 132 / 2e-35 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10036682 [exp] 128 / 7e-34 AT1G59820 1990 / 0.0 aminophospholipid ATPase 3 (.1) Lus10008947 [exp] 125 / 7e-33 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10030809 [exp] 125 / 8e-33 AT1G59820 2006 / 0.0 aminophospholipid ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013500 [exp] 386 / 1e-127 AT5G44240 1940 / 0.0 aminophospholipid ATPase 2 (.1.2) Potri.008G014600 [exp] 143 / 3e-39 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 140 / 2e-38 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G246200 [exp] 140 / 4e-38 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 139 / 1e-37 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 138 / 2e-37 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.003G043300 [exp] 122 / 1e-31 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 119 / 8e-31 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 113 / 8e-29 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 112 / 3e-28 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10018619 pacid=23180414 polypeptide=Lus10018619 locus=Lus10018619.g ID=Lus10018619.BGIv1.0 annot-version=v1.0 ATGAAGCGATTCGTGTATATCAACGACGACGAGTCGCCGACGCAGGATCTCTACTGCGACAACCGCATTTCTAACCGGAAGTACACTTTCTGGAACTTCC TCCCCAAGAATCTATGGGAGCAATTCAGCCGGTTTATGAACCAGTACTTCTTGTTGATTGCTTGCCTTCAGCTATGGTCACTAATCACTCCAGTGAATCC TGCAAGTACATGGGGTCCCTTGATCTTTATTTTTGCTGTATCCGCATCGAAAGAGGCTTGGGACGATTATAATAGGTCTCTCTCTGACAAGAAGGCTAAT GAGAAAGAAGTCTGGATCGTTAAGCACGGACTGAAAAAACCTATCCGAGCACAAGACATACGAGTGGGTGACATTGTGTGGCTTCGGGAGAATGACGAAG TTCCATGTGATCTTGTTCTGCTTGGTACCTCAGAGCCTCAAGGCCTTTGCTACATAGAGGGTGTTATTGAGTGTCCCAAACCAGATAAGGACATCCGGAG ATTTGATGCAAATCTACGTCTGTTCCCTCCCTTTATCGATACTGATGTTTGCCCATTAACAATAAAGAACACGGTTCTCCAGTCATGCTACTTGCGGAAT ACAGAATGGGCTTGTGGGGTAGCTGTCTACACAGGCATGTATACGTTAATAATGTTTGCTTAG
AA sequence Show only first row Show all	>Lus10018619 pacid=23180414 polypeptide=Lus10018619 locus=Lus10018619.g ID=Lus10018619.BGIv1.0 annot-version=v1.0 MKRFVYINDDESPTQDLYCDNRISNRKYTFWNFLPKNLWEQFSRFMNQYFLLIACLQLWSLITPVNPASTWGPLIFIFAVSASKEAWDDYNRSLSDKKAN EKEVWIVKHGLKKPIRAQDIRVGDIVWLRENDEVPCDLVLLGTSEPQGLCYIEGVIECPKPDKDIRRFDANLRLFPPFIDTDVCPLTIKNTVLQSCYLRN TEWACGVAVYTGMYTLIMFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018619 [exp]	0	1
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039854 [exp]	1.0	0.9708
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	3.5	0.9586
AT5G15680			ARM repeat superfamily protein...		Lus10031961 [exp]	3.7	0.9623
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	8.1	0.9561
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036223 [exp]	8.5	0.9564
AT2G46560			transducin family protein / WD...		Lus10030236 [exp]	8.8	0.9450
AT1G48090			calcium-dependent lipid-bindin...		Lus10017108 [exp]	11.0	0.9522
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018743 [exp]	11.8	0.9517
AT2G46560			transducin family protein / WD...		Lus10005975 [exp]	14.4	0.9481
AT1G48090			calcium-dependent lipid-bindin...		Lus10037833 [exp]	17.4	0.9399

Compare expression of checked genes

Lus10018619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.