Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44240 1279 / 0 ALA2 aminophospholipid ATPase 2 (.1.2) AT3G27870 358 / 7e-108 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 353 / 5e-106 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 347 / 6e-104 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G25610 345 / 6e-103 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 344 / 8e-103 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT5G04930 340 / 2e-101 ALA1 aminophospholipid ATPase 1 (.1) AT1G68710 338 / 2e-100 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 303 / 4e-88 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 303 / 9e-88 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039855 [exp] 1545 / 0 AT5G44240 1412 / 0.0 aminophospholipid ATPase 2 (.1.2) Lus10019152 [exp] 345 / 3e-103 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 342 / 5e-102 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 341 / 1e-101 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 339 / 8e-101 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 334 / 1e-99 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 331 / 5e-98 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10028873 [exp] 315 / 2e-92 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 312 / 1e-91 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013500 [exp] 1307 / 0 AT5G44240 1940 / 0.0 aminophospholipid ATPase 2 (.1.2) Potri.006G109200 [exp] 374 / 4e-113 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.012G058000 [exp] 347 / 7e-104 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 344 / 3e-103 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 315 / 4e-92 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G014600 [exp] 312 / 4e-91 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G246200 [exp] 312 / 5e-91 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 310 / 1e-90 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G132700 [exp] 310 / 2e-90 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 307 / 2e-89 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10018620 pacid=23180505 polypeptide=Lus10018620 locus=Lus10018620.g ID=Lus10018620.BGIv1.0 annot-version=v1.0 ATGTCTCCTGGTGTTTTTCTTCCAGGAAATGAAACAAAGCTGGGTATGAGCAGGGGTATACCTGAACCTAAACTTACAGCTATGGATGCCATGATTGACA AATTGACTGGTGCCATATTTGTCTTCCAGATAGTAGTTGTTGTAGTTCTTGGCATAGCAGGGAATGTGTGGAAGGACACTGAAGCAAGGAAGGTATCTTT GGATCTTGTGAAGAGTTTATATGCTAAGTTCATTGACTGGGATGTTGAGATGTTTGATCCAGAAACAGGCTCTTCATCTCATGCAACAAATACAGCGATA AGTGAAGACCTGGGACAGGTTGAGTACATTATGACTGACAAAACTGGAACTCTGACTGAGAACAAGATGGTCTTCAGGAGGTGTTGTATCAATGGCATAT TCTATGGTAATGAAAGTGGGGATGCTTTGAAAGATACAAGATTGCTCAATGCTGTTGCCGGTGGGTCTCCTGATGTCATTCGGTTTCTGACTGTCATGGC AATATGCAATACTGTTATACCTGTGCAAAGCAAAAGTGGAAATATTCTCTATAAAGCACAGTCTCAGGATGAAGAAGCTCTTGTCAAGGCTGCTGCTAAG TTGCATATGGTTTTCTTCAGTAAAAGCGGAAATCTTCTTGAAATCAGATTCAACGGTTCAGTAATTAACTATGAAGTCTTGGATACTCTGGAGTTCACTT CTGACAGGAAAAGAATGTCAGTAGTAGTTAGAGACGCCCAGAATGGCAAGATTTACCTCTTGTCCAAAGGAGCAGATGAAGCTATCCTTCCATATGCTTC TAGTGGACAACAAACAAGGGCATTTAGTGAGGCTGTAGATCAATATTCCCAGCTAGGGCTGCGTACATTATCTGTGGCATGGCGAGAACTTAAAGACGAT GAATATCAGGAGTGGTCATCGATGTTCAGAGAGGCGAGTAGCACACTGGTTGATAGGGAGTGGAGAATAGCTGAGGTGTGCCAGAGGTTGGAGCATGATC TTGAAGTTCTAGGAGTTACAGCAATAGAAGACCGTCTTCAGGATGGTGTACCAGAAACAATCGAGACACTTCGAAGAGCCGGAATAAATTTCTGGATGTT AACTGGAGACAAGCAGAATACTGCAATTCAAATTGCGCTGTCTTGCAATTTTATATCTCCAGAACCGAAGGGCCAGCTTCTTTTGATTGATGGGAAAACT GAGGATGAAGTCTGTAGAAGCTTGGAGAGAGTGTTGCTGACTATGAGAATAACGACTTCAGAGCCAAAGGATGTAGCATTTGTCGTCGATGGTTGGGCTC TTGAGATTGCTCTAAAACATCATCGAAAAGATTTTACCGAATTGGCAATTTTGTCCAGGACTGCTATTTGTTGCCGTGTGACCCCATCGCAGAAAGCACA GCTAGTGGAACTGTTGAAATCATGTGATTATAGAACGCTCGCAATTGGCGACGGTGGAAATGATGTGAGGATGATACAACAAGCCGATATTGGTGTTGGC ATAAGTGGAAGAGAAGGACTTCAGGCAGCAAGAGCAGCTGATTACAGCATTGGGAGTGTTTCTGGGACCAGTCTCTTTAATTCCGTTAGCTTGATGGCCT ATAACGTGTTCTACACTAGCATACCTGTTCTCGCTAGCGTCCTAGACAAAGACCTTAATGAAAAAACTGTAATGCAGCATCCTCAAATCCTATTCTACTG CCAAGCAGGAAGGCTTCTTAATCCTAGCACATTCGCTGGATGGTTCGGCCGGTCCCTTTTCCACGTGAGTTCCATTCCTCTGTTCTGCCGAATCTTAGGC CACTTGCAGCCATTCTGTTTCGACTCATATCTGCCTCGTGCAAATCTTACGTTGCAGGCAATTGTAGTGTTCATAATCAGCATAAACGCGTTTGCATACG AGAAGAGTGAAATGGAGGAGGTTGCGATGGTTGCTCTCTCTGGTTGCATATGGTTGCAGGCGTTTGTTGTAGCAATAGAGACAAACTCCTTCACGGTATT ACAACACCTTGCAATCTGGGGAAACTTGATTGCATTCTACATCATCAACTGGATCGTCAGTTGTATTCCGTCTTCAGGGATGTACACAATCATGTTCCGG CTGTGTAGCCAGCCATCTTACTGGATCACAATCTTCCTGATAGTTGGAGCAGGGATGGGGCCAATCCTCGCCATAAAATACTTCCGGTACACGTACAGAC CGAGTAAAATCAACACCCTCCAACAAGCAGAACGTCTAGGCGGACCGATCCTGTCCTTAGGCAGCATCGACCCGCAGCAAAGATCGATGGAGAAAGAAGT CTCGGCACTGTCAATCACCCAGCCTAAGAGCAGGAGTTCTTCAGTTTACGAACCACTTCTGTCGGAATCCCCCACCACAAGGAGGTCCATCGGAGGATCG TCCGCTCCAGCACCGTTCGATTTCTTTCAGTCCCAGTCCAGATTGTCTTCCAGCTACTCTAGAAACTGCAAGGACAATTGA
AA sequence Show only first row Show all	>Lus10018620 pacid=23180505 polypeptide=Lus10018620 locus=Lus10018620.g ID=Lus10018620.BGIv1.0 annot-version=v1.0 MSPGVFLPGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFVFQIVVVVVLGIAGNVWKDTEARKVSLDLVKSLYAKFIDWDVEMFDPETGSSSHATNTAI SEDLGQVEYIMTDKTGTLTENKMVFRRCCINGIFYGNESGDALKDTRLLNAVAGGSPDVIRFLTVMAICNTVIPVQSKSGNILYKAQSQDEEALVKAAAK LHMVFFSKSGNLLEIRFNGSVINYEVLDTLEFTSDRKRMSVVVRDAQNGKIYLLSKGADEAILPYASSGQQTRAFSEAVDQYSQLGLRTLSVAWRELKDD EYQEWSSMFREASSTLVDREWRIAEVCQRLEHDLEVLGVTAIEDRLQDGVPETIETLRRAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLIDGKT EDEVCRSLERVLLTMRITTSEPKDVAFVVDGWALEIALKHHRKDFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVG ISGREGLQAARAADYSIGSVSGTSLFNSVSLMAYNVFYTSIPVLASVLDKDLNEKTVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHVSSIPLFCRILG HLQPFCFDSYLPRANLTLQAIVVFIISINAFAYEKSEMEEVAMVALSGCIWLQAFVVAIETNSFTVLQHLAIWGNLIAFYIINWIVSCIPSSGMYTIMFR LCSQPSYWITIFLIVGAGMGPILAIKYFRYTYRPSKINTLQQAERLGGPILSLGSIDPQQRSMEKEVSALSITQPKSRSSSVYEPLLSESPTTRRSIGGS SAPAPFDFFQSQSRLSSSYSRNCKDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	0	1
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	1.4	0.8757
AT1G15780			unknown protein		Lus10015323 [exp]	2.4	0.8155
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	3.5	0.8298
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	6.3	0.7961
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10003065 [exp]	12.0	0.6910
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	12.0	0.7853
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	13.4	0.7663
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	17.3	0.7730
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	17.5	0.7746
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	20.8	0.7788

Compare expression of checked genes

Lus10018620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.