Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03790 218 / 1e-67 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 198 / 2e-60 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 194 / 1e-59 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G19810 187 / 1e-56 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT4G29190 182 / 3e-54 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G12850 174 / 1e-48 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT2G41900 172 / 6e-48 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 167 / 7e-47 C3HZnF zinc finger (CCCH-type) family protein (.1) AT5G07500 157 / 5e-46 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G40140 159 / 8e-44 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017708 [exp] 267 / 5e-88 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 226 / 6e-72 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10035006 [exp] 194 / 1e-58 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 191 / 2e-57 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10019709 [exp] 172 / 1e-47 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10040662 [exp] 156 / 5e-44 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10028970 [exp] 159 / 2e-43 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 155 / 4e-42 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013400 [exp] 253 / 9e-82 AT1G03790 265 / 2e-85 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G138300 [exp] 235 / 1e-74 AT1G03790 233 / 2e-73 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.006G234300 [exp] 186 / 1e-55 AT4G29190 306 / 4e-102 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G058600 [exp] 182 / 5e-54 AT2G19810 314 / 4e-105 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Potri.006G053900 [exp] 173 / 2e-48 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 173 / 3e-48 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 172 / 3e-48 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 172 / 5e-48 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 169 / 4e-47 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G053500 [exp] 164 / 1e-45 AT5G12850 476 / 5e-160 CCCH-type zinc finger protein with ARM repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10018621 pacid=23180454 polypeptide=Lus10018621 locus=Lus10018621.g ID=Lus10018621.BGIv1.0 annot-version=v1.0 ATGAGCTACGCAGACCACCATTTCTCCCTAGACGACATGTCGTCTTGCGAGCATTTCTACAAACACCTTACTCGCAACAACAAAGTGGATGATGATACCA ATGCTGTTGACTACGATGGCGGAGGCGATGACGATGACGATCCTTACTCGTCTGACCAGTTCAGGATGTACGAGTTCAAGATCCGGAGGTGTACACGTAG CAGGAGCCACGATTGGACGGTCTGTCCTTTCGCCCACCCGGGCGAGAAGGCTCGCCGTCGCGACCCGAGGAAGTTCCACTACACCGGATCTGTTTGCCCC GAGTTCCGTCGCGAGGGTGGAACTTGCGGTCGTGGGGATAACTGTGAGTTTGCACACGGTGTGTTTGAGTGCTGGCTGCACCCTTCCCGGTACCGCACAG AAGCTTGTAAAGACGGGAAGAGTTGCAAGCGGAAGGTCTGCTTCTTCGCTCACTCTCGCGGGCAGCTGCGCCAACTGCCGACAGAGAAGAGTTCCTCCTG CAGTAAGAAGATCGGTCATGATATGAATTTCAACCACCGCTGCAATGGAGCATCATCTCCAACGTCGACTCTGCTCGGCCTGTCCCACATCTCACCGCCC CTATCTCCGGCTTCCTTCTCCTCTGCATCGCGGCCTCTTTCGCCAGCGGGGTTTTTTAGCCGGCCGAGCAAGCTCCAACCTCGGTTCACGAGCTACAAAG ACGTTCTGGCTGAGCTGGTCTCGTCGTTGAAGACCATGAATTTCAACGTGGATGTCGCCCCGGCGGCGGCAATTGCTTCAGCATCGTCTCCTATCAAGAT GAACCTACGGGTGAATCCTTGGCTTAATAGAGAAGATTATTATAATCAGTTGGAAGAACAACAGTTTATGTCGCCGGTAACAACTCCTAGCTACGCGTCT CCAGCTAGTTCGTCAGGTGGAGATCGTTGGTTTGTAAACGAACCGGACCGGGTGGTCAACGACAACTCTCAAAACCGGTCCCGATCGGGTGGTGAAGCCA GAGGGTTGGACCCGGATTTGGGATGGGTTAATGAGCTGCTAATGTAA
AA sequence Show only first row Show all	>Lus10018621 pacid=23180454 polypeptide=Lus10018621 locus=Lus10018621.g ID=Lus10018621.BGIv1.0 annot-version=v1.0 MSYADHHFSLDDMSSCEHFYKHLTRNNKVDDDTNAVDYDGGGDDDDDPYSSDQFRMYEFKIRRCTRSRSHDWTVCPFAHPGEKARRRDPRKFHYTGSVCP EFRREGGTCGRGDNCEFAHGVFECWLHPSRYRTEACKDGKSCKRKVCFFAHSRGQLRQLPTEKSSSCSKKIGHDMNFNHRCNGASSPTSTLLGLSHISPP LSPASFSSASRPLSPAGFFSRPSKLQPRFTSYKDVLAELVSSLKTMNFNVDVAPAAAIASASSPIKMNLRVNPWLNREDYYNQLEEQQFMSPVTTPSYAS PASSSGGDRWFVNEPDRVVNDNSQNRSRSGGEARGLDPDLGWVNELLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	0	1
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	2.8	0.8897
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	4.5	0.8576
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032682 [exp]	4.9	0.8445
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	6.2	0.8701
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	7.9	0.8431
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	8.0	0.8826
AT4G24110			unknown protein		Lus10017328 [exp]	8.1	0.8474
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029580 [exp]	11.4	0.7736
					Lus10039778 [exp]	13.3	0.8230
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	13.4	0.8182

Compare expression of checked genes

Lus10018621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.