Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55100 267 / 2e-78 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G37360 268 / 4e-78 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55090 265 / 6e-77 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55130 264 / 7e-77 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT2G39350 262 / 5e-76 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55110 258 / 6e-75 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G53510 255 / 1e-73 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT5G13580 246 / 2e-70 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT5G06530 186 / 2e-49 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 181 / 2e-47 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039859 [exp] 1541 / 0 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 467 / 3e-154 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 457 / 2e-150 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10004274 [exp] 304 / 1e-91 AT2G37360 296 / 2e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10019238 [exp] 304 / 1e-91 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 261 / 1e-75 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 253 / 2e-72 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10030306 [exp] 187 / 2e-52 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 171 / 5e-46 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045100 [exp] 1071 / 0 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.015G036100 [exp] 1063 / 0 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.007G004800 [exp] 545 / 0 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 271 / 3e-79 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 265 / 7e-77 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 263 / 4e-76 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 261 / 2e-75 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 260 / 2e-75 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 181 / 7e-48 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.016G065900 [exp] 182 / 1e-47 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10018624 pacid=23180481 polypeptide=Lus10018624 locus=Lus10018624.g ID=Lus10018624.BGIv1.0 annot-version=v1.0 ATGGCCGCGCCAAGGTCGAGCCAGAGGGGAAAGAATGGCAGCCTCGAGAGCCTGCTGGACATGGACGAGACGGCCCTGAGGAGGAAAAACAACAACCTCG GGACGAACCATCTGAAGATGAACCAGATGGTTCATCCCGGGACGGGGCTGGTGTTCAAGGACCTGTCATACAGTGTGATGAAGAAGCAGAAGAAAGATGG TGAATGGATCACTAAAGAGGCTTACTTGCTCAATGAAATCTCCGGACATGCTGCCAAAGGTGAGATCATGGCCATCATGGGTCCGAGTGGTGCGGGCAAA TCGACTTTCCTTGATGCGCTCGCTGGCCGGATCGCTCAGGGCAGCCTCGAGGGCTCTGTCCGGATCGATGACAAGCCGGTGACTACCAGCTACATGAAGA TGATATCTTCTTACGTGATGCAAGATGATCAGCTCTTCCCTATGCTTACCGTCTTCGAGACGTTCATGTTCGCTGCGGAAGTCAGGCTTCCTCCCTCGAT CTCGAGGGCCGAGAAGAAGAAGCGAGTTCATGAACTTCTCGACCAACTCGGATTAACGAGTGCAACGCATACTTATATTGGGGATGAAGGCAGGAGGGGA GTCTCGGGTGGAGAACGACGAAGAGTATCAATCGGAGTCGACATCATCCACAAGCCGCCTCTTCTGTTTCTCGACGAACCAACTTCGGGTCTGGACTCGA CCAGCGCTTATAGCGTGGTCGAAAAGGTCAAAGACATTGCTCGTGGAGGGAGCATAGTGTTGATGACCATTCATCAACCTTCTTTCAGAATCCAGCTCCT ATTAGACCGTATCACCATGCTCGCCAGGGGAAGGCTGGTGTACATGGGAAGTCCAGGGGAACTACCTGCTTACCTATCAGGATTCGGCCGACAAGTCCCC GATGGCGAAAACAGCATTGAGTATCTCATCGATGTGATCAAGGAGTACGACGAATCGACAATCGGATTAGATCCTCTGGTGATGTACCAGAGAGAAGGAA TCAAGCCTGATCAAGTAGCCATGACTCCTATCCCTAAGCCACCAAAAACCCCCAGAACTCCTTACAGGAGCAAACAGAGCATTTCTGGACTCAGAGTTTC CATCCCACTCCAGAGTCACCATTTCTCATCCTCCGCTACACCTCGAGCTGATCGCTCAGCTCAATTCGACTACGAGGATGACGACGAAGATGATGACGAC GATGATGAAGATTTCGACAACTCGCTGGATCGGAGCAAGGCTGCCATGAAGATGAACACACCAATGCCTCACTTTATGCAGAGTGGAAACCATCCTCGCT TAGCTTCCCATTTCTACAAAGACTTCTCTGTTTGGCTCTACCATGGCTTCACCGGTACACCCCGCCGAGCACCTTCCTGGACTCCCGCAAGAACCCCCGG CGGGATGAAAACCCCAATCTCCGCCGCTAGAAGCAGAGCTTCCAGCAAATACCCCACCCCTCAACGAAACACTAACCCTAACATCAATTACCCTCCCAAA ACCCCAATCCAATCATCTCCCTCTCCATACCAATCCTTCTCCGAAACAATCGACGAAGAAGAATACTCCGATTCGACACCGCTGGACGATCTGGACCACC ACGGCCCAAAATTCGCGAATCCATGGATTCGCGAAGTCGGGGTCCTCTGCTGGCGGACTGCACTAAACGTGGTTCGCACACCAGAGCTCTTCCTATCTCG AGAGATTGTCCTCGTCGTAATGGCACTAATCCTCTCCTCCCTATTCAAAAACCTCGCCGACGATTCCTTCAAAACAATCAACCACATCCTCAATTTCTAC ATCTTCGCAGTCTGCCTAGTCTTCTTCTCATCTAACGACGCAGTCCCGACCTTCATCCAAGAGCGATTCATCTTCATCCGCGAGACCTCCCACAACGCCT ACCGCGCATCCTCCTACGTCGTCTCCACCTTAATCGTCTACCTCCCGTTCTTCGCTGTGCAAGGATTCTCCTTCGCCGCCATCACGAAGTTCAGCCTCCA CTTAAAGAGTAGTCTCTTCAACTTCTGGATGATTTTGTTTTCGTCCTTGATCACGACCAACGCTTACGTCATGTTAGTAAGCGCTCTTGTCCCGAGCTAC ATCACCGGGTACGCGGTCGTGATCGCGACCACCGCGTTGTTCTTCCTGACATGTGGATTCTTCCTGAAGCGGACGAGTATTCCGATCTGGTGGAGGTGGT TGCATTACATCTCGGCCATTAAGTACCCGTTCGAGGCGATGCTGACGAACGAGTTTAAAGGCGAGAGGTGTTATAACGGGACGTTTTCGGATTTGTCGCC TGGACCGATGGGGGAGGTGAAGCCGAGTGATCTACATGTGAGGTTGATCGGTGAAGGGAATCCGGCGGGGTTGTGTCCGTTGATCGGAGAGGATGTGATT TCGTCGATGGATATTACGGTGGATAATCTATGGTATGATGTTGCAATCTTGCTGGCTTGGGGTGTTCTTTACAGATTGTTTCTGTATGTGGTGCTCCGAT TCTACTCCAAGAACGTCAGGAAATGA
AA sequence Show only first row Show all	>Lus10018624 pacid=23180481 polypeptide=Lus10018624 locus=Lus10018624.g ID=Lus10018624.BGIv1.0 annot-version=v1.0 MAAPRSSQRGKNGSLESLLDMDETALRRKNNNLGTNHLKMNQMVHPGTGLVFKDLSYSVMKKQKKDGEWITKEAYLLNEISGHAAKGEIMAIMGPSGAGK STFLDALAGRIAQGSLEGSVRIDDKPVTTSYMKMISSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRAEKKKRVHELLDQLGLTSATHTYIGDEGRRG VSGGERRRVSIGVDIIHKPPLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQLLLDRITMLARGRLVYMGSPGELPAYLSGFGRQVP DGENSIEYLIDVIKEYDESTIGLDPLVMYQREGIKPDQVAMTPIPKPPKTPRTPYRSKQSISGLRVSIPLQSHHFSSSATPRADRSAQFDYEDDDEDDDD DDEDFDNSLDRSKAAMKMNTPMPHFMQSGNHPRLASHFYKDFSVWLYHGFTGTPRRAPSWTPARTPGGMKTPISAARSRASSKYPTPQRNTNPNINYPPK TPIQSSPSPYQSFSETIDEEEYSDSTPLDDLDHHGPKFANPWIREVGVLCWRTALNVVRTPELFLSREIVLVVMALILSSLFKNLADDSFKTINHILNFY IFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVSTLIVYLPFFAVQGFSFAAITKFSLHLKSSLFNFWMILFSSLITTNAYVMLVSALVPSY ITGYAVVIATTALFFLTCGFFLKRTSIPIWWRWLHYISAIKYPFEAMLTNEFKGERCYNGTFSDLSPGPMGEVKPSDLHVRLIGEGNPAGLCPLIGEDVI SSMDITVDNLWYDVAILLAWGVLYRLFLYVVLRFYSKNVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	0	1
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	1.0	0.9952
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	1.4	0.9949
AT5G46230			Protein of unknown function, D...		Lus10000355 [exp]	6.6	0.9530
AT4G40070			RING/U-box superfamily protein...		Lus10035931 [exp]	7.3	0.9417
					Lus10009618 [exp]	7.9	0.9880
AT2G40390			unknown protein		Lus10009844 [exp]	8.4	0.9605
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	9.2	0.9880
AT1G17400			unknown protein		Lus10039921 [exp]	9.6	0.9496
					Lus10005830 [exp]	10.2	0.9880
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	11.2	0.9880

Compare expression of checked genes

Lus10018624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.