Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31350 400 / 7e-141 GLX2-5 glyoxalase 2-5 (.1.2) AT1G06130 393 / 5e-138 GLX2-4 glyoxalase 2-4 (.1.2) AT2G43430 378 / 4e-132 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2) AT3G10850 143 / 3e-41 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT1G53580 43 / 0.0002 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039860 [exp] 551 / 0 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10017706 [exp] 477 / 3e-171 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 433 / 2e-154 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10034259 [exp] 144 / 1e-41 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029086 [exp] 144 / 1e-41 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029004 [exp] 134 / 8e-38 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10007336 [exp] 46 / 2e-05 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10020760 [exp] 45 / 3e-05 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026500 [exp] 461 / 7e-165 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 429 / 2e-152 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2) Potri.019G062600 [exp] 134 / 2e-37 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.001G380100 [exp] 46 / 1e-05 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.005G204800 [exp] 45 / 2e-05 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10018625 pacid=23180408 polypeptide=Lus10018625 locus=Lus10018625.g ID=Lus10018625.BGIv1.0 annot-version=v1.0 ATGCAAATGATCTCCAAGGCTTCCTGCGCCATGGCTTCCCTCTCTTCTTGCACTAGGGCAAGGAGTGCGGCGTCAGTGTGGCCAGGTGCTCGGCAACTCA GCACACGAAAGAGCCTATTGTGTGGATTCATGTGGCTGATGTCGACTCCGTTTAAAACTTTGCGATGCGCTAGCCGCACGATTAAGGTGTCTCAGTTCTG TAGTGTGGCATCAAGCATTTCATCCTCATTGCAGATTGAATTGGTGCCATGTCTGAGGGACAACTATGCATATCTGTTACACGATGCTGACACCGGCACT GTAGGGGTTGTTGATCCGTCGGAGTCAGTACCGGTTATAGATGCTCTAAGTAGGAAAGATCGAAACTTGACGTATATACTGAATACTCATCACCATTATG ATCATACGGGTGGGAATGAGGAGCTGAAAGCAAGGTATGGTGCAAAGGTAATCGGTTCGGGAGTTGATAGGGAGAGGATTCCTGGTATTGACATGGTACT GAATGATGGGGATAAGTGGATGTTTGGCAGTCATGAGGTCGTAGTCTTTGAAACTCCTGGGCACACCCGAGGTGTGATGCATGCTTCCCTTCAAAAGATC ACATCTTTACCGGACGAAACAAAGATCTTCTGCGGCCACGAGTACACCTTGAGCAACTCAAAGTTCGCCATGTCGATTGAGCCCAACAACGAGTCGCTCG AGTCCTATGCAGCGGAAGTAGCACACCTTCGCAGCAAGAGCTTGCCAACGATTCCGACTACTCTGAAAGTTGAGAAGGCTTGCAATCCTTTCCTCCGGAC CTCGAGTGCAGAGATCCGTCGAATGTTGAAGATTCCTGAGACGGCTAGCAATTCCGAAGCATTGGGAGTCATCCGTCGCGCCAAAGACAGTTTTTGA
AA sequence Show only first row Show all	>Lus10018625 pacid=23180408 polypeptide=Lus10018625 locus=Lus10018625.g ID=Lus10018625.BGIv1.0 annot-version=v1.0 MQMISKASCAMASLSSCTRARSAASVWPGARQLSTRKSLLCGFMWLMSTPFKTLRCASRTIKVSQFCSVASSISSSLQIELVPCLRDNYAYLLHDADTGT VGVVDPSESVPVIDALSRKDRNLTYILNTHHHYDHTGGNEELKARYGAKVIGSGVDRERIPGIDMVLNDGDKWMFGSHEVVVFETPGHTRGVMHASLQKI TSLPDETKIFCGHEYTLSNSKFAMSIEPNNESLESYAAEVAHLRSKSLPTIPTTLKVEKACNPFLRTSSAEIRRMLKIPETASNSEALGVIRRAKDSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31350		GLX2-5	glyoxalase 2-5 (.1.2)		Lus10018625 [exp]	0	1
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	3.9	0.8492
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	5.0	0.8589
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	5.5	0.8435
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	6.0	0.8563
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	6.0	0.8476
AT2G38185			RING/U-box superfamily protein...		Lus10004813 [exp]	8.8	0.8263
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	9.0	0.8302
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	10.2	0.8205
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	10.4	0.8398
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	10.6	0.8197

Compare expression of checked genes

Lus10018625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.