Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20610 508 / 3e-179 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G53970 503 / 7e-178 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 493 / 6e-174 Tyrosine transaminase family protein (.1) AT4G28420 484 / 4e-170 Tyrosine transaminase family protein (.1.2) AT4G28410 480 / 1e-168 Tyrosine transaminase family protein (.1) AT2G24850 404 / 1e-138 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 382 / 2e-130 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 375 / 1e-127 Tyrosine transaminase family protein (.1) AT1G77670 108 / 1e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 87 / 1e-18 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039861 [exp] 800 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017704 [exp] 638 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 628 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017705 [exp] 624 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017703 [exp] 542 / 0 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033659 [exp] 536 / 0 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017934 [exp] 531 / 0 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 513 / 3e-177 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10032654 [exp] 473 / 1e-166 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 637 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 621 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 615 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 615 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 590 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 526 / 0 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 508 / 6e-180 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 248 / 2e-81 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.005G175400 [exp] 109 / 8e-26 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 103 / 4e-24 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10018626 pacid=23180477 polypeptide=Lus10018626 locus=Lus10018626.g ID=Lus10018626.BGIv1.0 annot-version=v1.0 ATGGGGGAAGAGAGTTTCGCGACGGAGAACGGCAATGGCGGGAAGAAGAAATGGGGGTTCAAGGCGAACAGCGGGCTCATGGCCGCTTCTGAAATCACAG TCCGTGGAGTTCTCAACATTTTGAATTCGAAACTGAACGGAGACGATAAACGACATGTCGTACCGCTAGGCCATGGCGATCCGTCTGCTTTCCCCTGTTT CAGAACCAGTGTTGATGCAGAGGATGCTGTGGCTGATTCGTTGAGATCTGGGAAATTCAATCATTACTCCCCCACTGTTGGTGTTCTCCCTGCTCGAAGG GCTATTGCAGAATATCTTAATCAGAATCTCCCAAACAAGCTATCCTCAGATGACGTCTTCCTAACAGTCGGATGCACTCAAGCAATCGAAACTGCACTAA CGGTTCTCGCTCGACCAGGTGCGAACATCCTGCTTCCCAGGCCCGGATTCCCTTACTACGAAGCTCGAGCTGCTGTGTCTGGACTCGAAGTCCGACACTT TGATCTACTTCCTGAAAAGGGCTGGGAAGTCGATCTCGAAGCTGTCGAATCTCTAGCTGATTCGAACACCCTCGCCATGGTCGTTATTAACCCTGGAAAC CCTTGTGGATGTGTTTACACTTACCAGCATTTGAAGAGAGTTGCTGAGACGGCTGAAAAGCTGGGAATACTGGTGATTTCTGATGAAGTGTATGCTCATC TTGATTTTGGAAGAAACCGGTTTGTTCCGATGGGTGTGTTTGGATCGGTTGTTCCTGTTTTGACGCTCGGATCGATATCGAAGAGATGGATTGTTCCTGG CTGGCGGCTTGGCTGGCTTGTTATGAATGACCCGAATGGCATCCTGGTCGAAACTGGGATGGTTGAGTCGATCAAGGGCTGCCTCGACATCTCGTCCGAT CCTGCAACTTTCATTCAGGGCGGAGTCGAACGACTGATCAGAAACACGAAGGACGAGTTCTTCTCGAGAATCAAGACCTTGTTGAAGGAGGCCGCAGATT CATGCTTCGACAGGATTAAGGACATTCCTTGCGTTACCTGTCCGATGAAACCTGAGGGTTCAATGTTTGTTATGGTGAAGCTGAACTTGGAATCACTGGA AGACATAGATGACGACATGGATTTCTGCATCAAGCTGGCTCGAGAGGAATCCGTGATCGTCCTCCCTGGAATGGCAGTAGGTCTGAAGAACTGGCTTCGG GTTACTTTTGCAGTGGAACCGTCTGCTCTCGACGACGGGCTCCATAGGATGAAAGCATTCTGCCACAGGCATTCCAAGGCGTAG
AA sequence Show only first row Show all	>Lus10018626 pacid=23180477 polypeptide=Lus10018626 locus=Lus10018626.g ID=Lus10018626.BGIv1.0 annot-version=v1.0 MGEESFATENGNGGKKKWGFKANSGLMAASEITVRGVLNILNSKLNGDDKRHVVPLGHGDPSAFPCFRTSVDAEDAVADSLRSGKFNHYSPTVGVLPARR AIAEYLNQNLPNKLSSDDVFLTVGCTQAIETALTVLARPGANILLPRPGFPYYEARAAVSGLEVRHFDLLPEKGWEVDLEAVESLADSNTLAMVVINPGN PCGCVYTYQHLKRVAETAEKLGILVISDEVYAHLDFGRNRFVPMGVFGSVVPVLTLGSISKRWIVPGWRLGWLVMNDPNGILVETGMVESIKGCLDISSD PATFIQGGVERLIRNTKDEFFSRIKTLLKEAADSCFDRIKDIPCVTCPMKPEGSMFVMVKLNLESLEDIDDDMDFCIKLAREESVIVLPGMAVGLKNWLR VTFAVEPSALDDGLHRMKAFCHRHSKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	0	1
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	1.0	0.9476
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	2.6	0.8977
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	3.2	0.9253
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	3.2	0.9087
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	5.5	0.9082
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	6.9	0.9145
AT3G57680			Peptidase S41 family protein (...		Lus10040494 [exp]	6.9	0.8767
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10011805 [exp]	7.1	0.8755
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040380 [exp]	7.7	0.8902
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10040683 [exp]	9.2	0.8571

Compare expression of checked genes

Lus10018626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.