Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 192 / 8e-58 O-methyltransferase family protein (.1) AT4G35150 166 / 3e-48 O-methyltransferase family protein (.1) AT5G54160 153 / 4e-43 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 144 / 9e-40 O-methyltransferase family protein (.1.2) AT1G77520 129 / 5e-34 O-methyltransferase family protein (.1) AT5G53810 127 / 2e-33 O-methyltransferase family protein (.1) AT3G53140 126 / 4e-33 O-methyltransferase family protein (.1) AT1G21130 119 / 3e-30 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G33030 118 / 4e-30 O-methyltransferase family protein (.1) AT1G21100 118 / 7e-30 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018629 [exp] 460 / 8e-163 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10001510 [exp] 443 / 6e-156 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10017691 [exp] 384 / 8e-133 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 371 / 1e-127 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 356 / 7e-122 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10038331 [exp] 332 / 9e-110 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10006692 [exp] 300 / 1e-99 AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1) Lus10032304 [exp] 292 / 9e-97 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10008538 [exp] 292 / 1e-96 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121900 [exp] 412 / 4e-144 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 412 / 7e-144 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 411 / 9e-144 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 410 / 2e-143 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 409 / 7e-143 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 392 / 4e-136 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 384 / 3e-133 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 380 / 1e-131 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 335 / 2e-113 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 329 / 2e-111 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10018628 pacid=23180401 polypeptide=Lus10018628 locus=Lus10018628.g ID=Lus10018628.BGIv1.0 annot-version=v1.0 ATGGGATCACTACGCAGTAATGTCGCCGCCGGAAGCACAACCTCGTCGGAGCTCCTCGAAGCTCAGACGCACGTGTGGCATCACACCTTCAACTTCGTCA CGTCCATGTCACTAAAATGCGCCGTCCAGCTCGGCATCCCTGACGCCGTCAACTCCAACGGCGGCCACCGGCCCATCACCCTCCCTGACCTCGTCACCGC CTTGAATATCCCACCAACAAAATCTCCCTACGTCCACCGTCTCCTCCGTGTCCTCGTCCACTCCGGCTTCCTCATCTCCCACGGCGGCGAAGAAAGCTAC TCGCTCACACCCGCCGGCAGACTCCTCCTTAAGGACAGCCCTTACAACGTGAGGGCGTTAGTCCTCATGATCCTCGATCCGGCCATGTTGGAACCCTACC AGTTCATGAGCGAATGGTACCGGAGCGAAGCAACCGGCGATATAACGCCGTTTTCCCTCGCTCACGAGGGCAGGATGGTTTGGGAGCACATGGCGGTGGA CCCCGCACTGTCTGACGTGTTTAACGACGCGATGGCCGGAGATAGCTCCGTGGTTGGAGAAGTGCTGGTGAAGGAAGCGAAGTCGTTCTTAGGAGGTGTG GGGTCCCTTGTCGACGTGGCAGGTGGGACCGGGAATATGACCAGGGCGATCGCTATGTCGTTTCCGGATATGGATTGTACTGTTCTGGATCTGCCGCATA TCGTTTCAAGACTTGAAGGTTGTGGTAACCTGAAGTATGTTGCTGGTGATATGTTTGTTGCTATCCCACCGGCCGACGTCGTTTTGTTCAAGTGGATACT ACATGATTGGAGCGACGAGAACTGTGTCAAGATCCTGAAGAACAGCAAGAAGGCTATCACCACCACCAGAGAAGGAAAGTCCGGGAAAGTGATGATCATC GACATGGTACTGGACAACGAAAACCGGGTCGATGAGAATTCGAAAACAACGCAGCTCGGTTTCGACATGGAGATGATGATGATCGCGAGCGGGAAGGAGA GGAACGAGAAAGAGTGGGGGGAGTTGTTCAAGGAATCTGGGTTCACTAACTATCGGATCAACCCGATACTTGGGATTCGAGCTCTCATTGAGCTTTATCT TTGA
AA sequence Show only first row Show all	>Lus10018628 pacid=23180401 polypeptide=Lus10018628 locus=Lus10018628.g ID=Lus10018628.BGIv1.0 annot-version=v1.0 MGSLRSNVAAGSTTSSELLEAQTHVWHHTFNFVTSMSLKCAVQLGIPDAVNSNGGHRPITLPDLVTALNIPPTKSPYVHRLLRVLVHSGFLISHGGEESY SLTPAGRLLLKDSPYNVRALVLMILDPAMLEPYQFMSEWYRSEATGDITPFSLAHEGRMVWEHMAVDPALSDVFNDAMAGDSSVVGEVLVKEAKSFLGGV GSLVDVAGGTGNMTRAIAMSFPDMDCTVLDLPHIVSRLEGCGNLKYVAGDMFVAIPPADVVLFKWILHDWSDENCVKILKNSKKAITTTREGKSGKVMII DMVLDNENRVDENSKTTQLGFDMEMMMIASGKERNEKEWGELFKESGFTNYRINPILGIRALIELYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	4.6	0.8490
AT1G47980			unknown protein		Lus10037797 [exp]	6.0	0.8478
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	11.6	0.8283
AT4G05160			AMP-dependent synthetase and l...		Lus10026544 [exp]	16.9	0.7980
AT4G34880			Amidase family protein (.1)		Lus10034477 [exp]	17.0	0.6382
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10020312 [exp]	17.5	0.7594
AT4G31980			unknown protein		Lus10038338 [exp]	20.0	0.7262
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	23.0	0.7846
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	23.9	0.8193
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	26.1	0.7896

Compare expression of checked genes

Lus10018628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.