Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 207 / 2e-63 O-methyltransferase family protein (.1) AT4G35150 196 / 4e-60 O-methyltransferase family protein (.1) AT5G54160 157 / 2e-44 ATOMT1 O-methyltransferase 1 (.1) AT5G53810 138 / 2e-37 O-methyltransferase family protein (.1) AT3G53140 138 / 2e-37 O-methyltransferase family protein (.1) AT1G77520 137 / 7e-37 O-methyltransferase family protein (.1) AT1G51990 133 / 1e-35 O-methyltransferase family protein (.1.2) AT1G33030 123 / 4e-32 O-methyltransferase family protein (.1) AT1G63140 120 / 1e-30 O-methyltransferase family protein (.1.2) AT1G77530 116 / 3e-29 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001510 [exp] 490 / 1e-174 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10018628 [exp] 460 / 6e-163 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10017691 [exp] 396 / 1e-137 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 386 / 1e-133 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 375 / 3e-129 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10038331 [exp] 313 / 1e-102 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10013945 [exp] 296 / 2e-98 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10015311 [exp] 288 / 3e-95 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10033655 [exp] 287 / 6e-95 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093100 [exp] 402 / 4e-140 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 402 / 5e-140 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 401 / 8e-140 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 399 / 6e-139 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 390 / 1e-135 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 388 / 2e-134 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 382 / 2e-132 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 377 / 1e-130 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 344 / 3e-117 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 333 / 4e-113 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10018629 pacid=23180473 polypeptide=Lus10018629 locus=Lus10018629.g ID=Lus10018629.BGIv1.0 annot-version=v1.0 ATGACAAGCTCGGAGCTACTTGAAGCTCAGACCCACGTGTGGCACCACACATTCAACTTCGTCACCTCCATGTCGCTAAAATGCGCCGTCCAGCTCGGCA TCCCGGAAGCCATCCACTCCCACGGCGGCGGACAACGTCCGATCACCCTCCCTGACCTCGTCGCCGCCTTAAAAATCCCACCGTCGAAATCCCCGTACCT CCACCGCCTCCTCCGAGTCCTCGTCCACTCTGGATTCCTCATCCGCCACTACTCTGGTGGCGGCGGAGGTGGAAGCTACTCGCTTACTGCCGCCGGGAAA TACCTTGTCCGGGACAAGCCCCTCAACGGCGGCGCGTTCGTGGTTATGGTGCTGGATCCGGTTCTGGTCAGCACGTACCATGATATGAGCGCGTGGTTTC TAAGTGAGAAAGATGATCCGACGCCGTTTTACGCAGCTCATGGGAAACAGGTATGGGAACACATGGGTGACAATCCAAAGATGAATGACGTGTTCAATGA GGCCATGGCGACCGATAGCCGTCTGATTGCTGAGGTGGTCGTTAATGAAGGGAAGGCCGCTTTCGAAGGGGTGGCGTCCCTTGTCGACGTGGCTGGGGGG ACCGGGACTATGGCGAAGATCATTGCAGCTTCGTATCCCGAGATGGATTGTACCGTGTTGGACCTCCCACATGTTGTGTCGGGATTAGAAGGGAGCCATA ATTTGAAGTTCGTGGCTGGTGACATGTTCGAATCCGTCCCTTCTGCTGATGCCGTTTTGCTCAAGTGGATACTTCATGATTGGAGCGACGAGAATTGTGT GAGAATACTAAAGAAGTGTAAGAAGGCAGTAACGACATCTTCGGTTAATGAGAAAGTTGGGAAAGTGATCATAATGGACATGGTGTTGGGTGGCAAGAAC CTCGACGAGAGAACAAAGGCGGTTCAGTATGGATTCGACATCGAAATGATGGTTAACATAAGCGGGAAGGAGAGGGACGAGGAAGAGTGGGCTAAGCTCT TCGTCGAAGTAGGGTTCGTGAGCTATCATATTCGTCCGATTCTCGGCGCAAGAGCTCTCATTGAGGTCTATCCTTAG
AA sequence Show only first row Show all	>Lus10018629 pacid=23180473 polypeptide=Lus10018629 locus=Lus10018629.g ID=Lus10018629.BGIv1.0 annot-version=v1.0 MTSSELLEAQTHVWHHTFNFVTSMSLKCAVQLGIPEAIHSHGGGQRPITLPDLVAALKIPPSKSPYLHRLLRVLVHSGFLIRHYSGGGGGGSYSLTAAGK YLVRDKPLNGGAFVVMVLDPVLVSTYHDMSAWFLSEKDDPTPFYAAHGKQVWEHMGDNPKMNDVFNEAMATDSRLIAEVVVNEGKAAFEGVASLVDVAGG TGTMAKIIAASYPEMDCTVLDLPHVVSGLEGSHNLKFVAGDMFESVPSADAVLLKWILHDWSDENCVRILKKCKKAVTTSSVNEKVGKVIIMDMVLGGKN LDERTKAVQYGFDIEMMVNISGKERDEEEWAKLFVEVGFVSYHIRPILGARALIEVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	2.2	0.9315
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	3.2	0.9217
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10012266 [exp]	4.2	0.8701
					Lus10028788 [exp]	4.6	0.9118
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	5.0	0.8966
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	6.3	0.9058
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	8.4	0.8822
AT3G29000			Calcium-binding EF-hand family...		Lus10026974 [exp]	8.8	0.8691
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	11.0	0.8950
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10026333 [exp]	11.3	0.8509

Compare expression of checked genes

Lus10018629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.