Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09310 194 / 2e-63 Protein of unknown function, DUF538 (.1) AT1G56580 189 / 1e-61 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT5G46230 134 / 3e-40 Protein of unknown function, DUF538 (.1) AT4G24130 115 / 9e-33 Protein of unknown function, DUF538 (.1) AT5G49600 114 / 3e-32 Protein of unknown function, DUF538 (.1) AT1G30020 105 / 5e-29 Protein of unknown function, DUF538 (.1) AT1G02813 47 / 8e-07 Protein of unknown function, DUF538 (.1) AT5G37070 44 / 1e-05 Protein of unknown function, DUF538 (.1) AT3G08890 43 / 3e-05 Protein of unknown function, DUF538 (.1.2) AT2G03350 42 / 9e-05 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039866 [exp] 325 / 4e-115 AT1G09310 196 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 215 / 5e-72 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 215 / 6e-72 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 129 / 7e-38 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 126 / 4e-37 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10037804 [exp] 114 / 4e-32 AT5G49600 144 / 2e-44 Protein of unknown function, DUF538 (.1) Lus10017087 [exp] 115 / 2e-31 AT5G49600 145 / 3e-43 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 107 / 1e-29 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 105 / 6e-29 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011200 [exp] 210 / 8e-70 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 204 / 7e-68 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 158 / 1e-49 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 133 / 1e-39 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 131 / 4e-39 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 120 / 2e-34 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 91 / 2e-23 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 82 / 4e-20 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 81 / 1e-19 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.008G092500 [exp] 48 / 4e-07 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10018630 pacid=23180472 polypeptide=Lus10018630 locus=Lus10018630.g ID=Lus10018630.BGIv1.0 annot-version=v1.0 ATGTCTCTAGTAACAGAAGCCATCCGAGCCAGCGCCACCGAGGTCTACACAGGCGACGAGATGTGCCAAGTCAAATCCAAGGAGCTCCTCAAGGAGATCG AACTCCCCAACGGCCTCCTCCCCCTACACGACATCGAGGAGTGCGGGATCGTTCGCGAGACCGGGTTCGTGTGGCTGAAGCAGAAGAAGAGCATCACCCA CAAGTTCGACAAGATCGGGAAGCTCGTCAGCTACGCCCCCGAGGTCACTGCCGTGGTCGAGAAGGGCAAGATCAAGAAGCTCACGGGCGTCAAGACCAAG GAGCTTCTCATCTGGGTGTCGCTCTCCGACATCTACACCGCAGACGAGGGGAAAATTACCTTTAAGACCCCGACGGGTCTTTACAGGTCTTTTCCCGCGA CCGCTTTTCAAGTTCCCGAAGAGGCAGTGAAGGAAGCGTCCTCGCANNNNNNNNNNCCACCACCGTCGGTGCAGCACCACCAAAAAAAGGGGCGGGCGAG CCCGTGGCGGTTAAGGAAGTGTAAGTTTGGTTTGGGTTATGAGACACGAGTAAAGAAATCATGTCCATCGATCATGCAATACCAATGA
AA sequence Show only first row Show all	>Lus10018630 pacid=23180472 polypeptide=Lus10018630 locus=Lus10018630.g ID=Lus10018630.BGIv1.0 annot-version=v1.0 MSLVTEAIRASATEVYTGDEMCQVKSKELLKEIELPNGLLPLHDIEECGIVRETGFVWLKQKKSITHKFDKIGKLVSYAPEVTAVVEKGKIKKLTGVKTK ELLIWVSLSDIYTADEGKITFKTPTGLYRSFPATAFQVPEEAVKEASSXXXXPPPSVQHHQKKGRASPWRLRKCKFGLGYETRVKKSCPSIMQYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09310			Protein of unknown function, D...		Lus10018630 [exp]	0	1
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	1.0	0.8435
AT3G15810			Protein of unknown function (D...		Lus10007118 [exp]	2.0	0.8090
AT5G55980			serine-rich protein-related (....		Lus10043215 [exp]	4.9	0.7999
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10033574 [exp]	5.7	0.8347
AT4G28760			Protein of unknown function (D...		Lus10022842 [exp]	6.9	0.7902
AT2G20920			Protein of unknown function (D...		Lus10005056 [exp]	11.2	0.7918
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10017616 [exp]	11.6	0.8038
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10011215 [exp]	15.2	0.7826
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	15.6	0.7816
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10018466 [exp]	18.0	0.8183

Compare expression of checked genes

Lus10018630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.