Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28480 128 / 6e-39 roxy19, GRX480 Thioredoxin superfamily protein (.1) AT1G03850 109 / 1e-31 ATGRXS13 glutaredoxin 13, Glutaredoxin family protein (.1.2) AT4G15700 96 / 8e-27 Thioredoxin superfamily protein (.1) AT4G15660 95 / 3e-26 Thioredoxin superfamily protein (.1) AT4G15690 94 / 4e-26 Thioredoxin superfamily protein (.1) AT4G15670 94 / 7e-26 Thioredoxin superfamily protein (.1) AT4G15680 93 / 1e-25 Thioredoxin superfamily protein (.1) AT5G18600 92 / 3e-25 Thioredoxin superfamily protein (.1) AT5G14070 91 / 4e-24 ROXY2 Thioredoxin superfamily protein (.1) AT4G33040 87 / 1e-22 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039867 [exp] 245 / 3e-85 AT1G28480 127 / 7e-39 Thioredoxin superfamily protein (.1) Lus10013962 [exp] 134 / 1e-41 AT1G28480 135 / 3e-42 Thioredoxin superfamily protein (.1) Lus10017693 [exp] 121 / 7e-37 AT1G28480 100 / 4e-29 Thioredoxin superfamily protein (.1) Lus10033649 [exp] 119 / 5e-36 AT1G28480 100 / 5e-29 Thioredoxin superfamily protein (.1) Lus10041538 [exp] 107 / 7e-31 AT5G14070 134 / 3e-41 Thioredoxin superfamily protein (.1) Lus10035183 [exp] 97 / 9e-27 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1) Lus10011333 [exp] 97 / 1e-26 AT5G14070 151 / 1e-47 Thioredoxin superfamily protein (.1) Lus10038514 [exp] 92 / 2e-24 AT5G14070 122 / 2e-36 Thioredoxin superfamily protein (.1) Lus10023295 [exp] 90 / 7e-24 AT5G14070 123 / 5e-37 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134800 [exp] 158 / 1e-50 AT1G28480 141 / 9e-44 Thioredoxin superfamily protein (.1) Potri.017G017300 [exp] 157 / 2e-50 AT1G28480 132 / 3e-40 Thioredoxin superfamily protein (.1) Potri.004G049800 [exp] 140 / 1e-43 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1) Potri.011G058800 [exp] 128 / 5e-39 AT1G28480 102 / 2e-28 Thioredoxin superfamily protein (.1) Potri.001G325800 [exp] 102 / 5e-29 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.003G167000 [exp] 100 / 2e-28 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.001G060600 [exp] 100 / 3e-28 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.010G021800 [exp] 86 / 8e-23 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 86 / 1e-22 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.002G209300 [exp] 83 / 1e-21 AT1G03020 143 / 7e-46 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10018631 pacid=23180406 polypeptide=Lus10018631 locus=Lus10018631.g ID=Lus10018631.BGIv1.0 annot-version=v1.0 ATGCAGGAGGCGATTCCGTACAAGTCATGGCAACCGCAATATACAAAGCAGCCGTTTTTAACCAAAGGCGGCGACATCCTCCCAGCCACGGCGGCGCCGG CGGAGGTTGTGTCAGAGAATGCCATAGTAGTCTTCGCCAGGAGAGGCTGCTGCATGACCCACGTCGTCAAGCGGCTGCTCCTCTGTTTAGGGGTCAACCC GCCGGTGTTCGAGGTGGACGAGGGCGACGAGGGTTGGGTTTTGAAGGATTTGAAGTTGCCGGCTACGGTCGGAATGCAGTTTCCGGCGGTTTTTATCGGT GGAGAGTTGTTTGGTGGGTTGGATAAGGTCATGGCGAGTCATATCGCCGGCGAGTTGGTTCCTGTTCTTAAACAAGCTGGAGCCTTGTGGCTTTGA
AA sequence Show only first row Show all	>Lus10018631 pacid=23180406 polypeptide=Lus10018631 locus=Lus10018631.g ID=Lus10018631.BGIv1.0 annot-version=v1.0 MQEAIPYKSWQPQYTKQPFLTKGGDILPATAAPAEVVSENAIVVFARRGCCMTHVVKRLLLCLGVNPPVFEVDEGDEGWVLKDLKLPATVGMQFPAVFIG GELFGGLDKVMASHIAGELVPVLKQAGALWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	3.5	0.9402
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	6.7	0.9259
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	9.5	0.9136
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	9.9	0.9315
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	11.0	0.8886
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	11.0	0.9222
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	15.8	0.8883
AT4G12070			unknown protein		Lus10031828 [exp]	16.0	0.8841
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	16.2	0.8891
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10020136 [exp]	16.4	0.9225

Compare expression of checked genes

Lus10018631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.