Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44150 158 / 4e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039868 [exp] 470 / 8e-167 AT5G44150 201 / 2e-61 unknown protein Lus10038027 [exp] 221 / 7e-71 AT5G44150 123 / 2e-33 unknown protein Lus10035461 [exp] 208 / 2e-66 AT5G44150 91 / 1e-23 unknown protein Lus10005598 [exp] 198 / 2e-62 AT5G44150 124 / 2e-34 unknown protein Lus10011074 [exp] 170 / 3e-52 AT5G44150 84 / 1e-19 unknown protein Lus10014193 [exp] 101 / 2e-26 AT5G44150 50 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017200 [exp] 144 / 8e-39 AT5G44150 137 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018632 pacid=23180378 polypeptide=Lus10018632 locus=Lus10018632.g ID=Lus10018632.BGIv1.0 annot-version=v1.0 ATGGACGCCAAATCACTGGCGAAGTCCAAGCGAGCTCACTCTCTACACCACAGCAAGAAGCCACACTCGTCTTGTAAACCGACCGGTTCAGCTACCGCAG GCGGCGGAGATGGTCGAATCGCAGGTGAATCGTCTGGAAAGCCGGTTAAGGATCGAAAACAAGCTGCCTCGTCCGCTTTGCCATCGAATTCCGATCGTTA CGAGGAAGAGTTTGATTCTGATTCGGCGGAAATGTCAGCTAAGACCTCCGGTGTAGCGTTGCCGAAGAGCAAAGGTGCAGATTACCGCCATCTGCTTGCT GAAGCTCAATCTCAGCCGCGTTCCAGAGGCTTCTTGGATAGCTCGTTTTCTCTAGACGATGTTTTGCCTGATGAGTTCAAACACTCGTTAGGTCCGATGC TTTCAGCAAGAGGAGATGGGATCTTGTCATGGATTTTGAATGATAATTTCATTGTGGAAGACGAGATTGGAGCGAATGCTATTCATGAGGCATCTTTTCT ATCACTGAACTTGCATGCTCTCGAGCAACAACTGGGCAAAGTAGATATATCGAAGAGGCTGTTCATCGAACCGGATATATTACCACCAGACCTGGTTACA CGTATTCAGGAAGACTCGACATCAATGAGTGAAAGTGCAGTTAGTACATCTATGCCCGAACACTCGGCTAACCCCGACATTTCTGATGCTGATGCAATAT TCGATGAACCAACCTCTACAGTCAACGACTACTTCAAACCGACCCTCACTCAATCGCCAAAATCTGCTAGTAAAGTTAAAACCTTTGAGGCGGCAGCTGC AGAGGCAGAACTGGACATGCTTCTCGATTCGTTCAGTGACACCAAGCTCGTCGAAACTTCCACCTCCACTTCAGGTACTACTTTCCCTGTATGGCAGAAC TCAAGGATGAATGTACCTTCAGAATTGGACGACATGCTTGATACTTTACTTGAAGAAACATCCTCTGTATTGAACAACAACAACACAAGAGACTCGAAAT CTCTGCCTCCTGGAGCCGGATCCTCCTCATCCTCCCAGTCAGTCTCGAAGTCCGAGGTTCTTGATGATTTCGGTTCTTGGTTAGACACAATGTGA
AA sequence Show only first row Show all	>Lus10018632 pacid=23180378 polypeptide=Lus10018632 locus=Lus10018632.g ID=Lus10018632.BGIv1.0 annot-version=v1.0 MDAKSLAKSKRAHSLHHSKKPHSSCKPTGSATAGGGDGRIAGESSGKPVKDRKQAASSALPSNSDRYEEEFDSDSAEMSAKTSGVALPKSKGADYRHLLA EAQSQPRSRGFLDSSFSLDDVLPDEFKHSLGPMLSARGDGILSWILNDNFIVEDEIGANAIHEASFLSLNLHALEQQLGKVDISKRLFIEPDILPPDLVT RIQEDSTSMSESAVSTSMPEHSANPDISDADAIFDEPTSTVNDYFKPTLTQSPKSASKVKTFEAAAAEAELDMLLDSFSDTKLVETSTSTSGTTFPVWQN SRMNVPSELDDMLDTLLEETSSVLNNNNTRDSKSLPPGAGSSSSSQSVSKSEVLDDFGSWLDTM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44150			unknown protein		Lus10018632 [exp]	0	1
AT3G22430			unknown protein		Lus10041205 [exp]	4.9	0.8540
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	5.7	0.8482
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	8.6	0.8653
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	9.9	0.8369
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	12.7	0.8074
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	13.4	0.8210
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	16.5	0.8091
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	16.9	0.8475
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	17.7	0.7714
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	17.9	0.8519

Compare expression of checked genes

Lus10018632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.