Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03840 337 / 2e-111 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 327 / 6e-108 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT5G66730 288 / 1e-92 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 286 / 3e-92 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G55110 281 / 4e-90 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G13810 280 / 5e-89 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT2G02080 277 / 6e-89 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT4G02670 276 / 9e-89 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT5G03150 278 / 1e-88 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT2G02070 280 / 3e-88 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010820 [exp] 290 / 4e-96 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 295 / 9e-95 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10007409 [exp] 288 / 1e-92 AT3G45260 308 / 4e-100 C2H2-like zinc finger protein (.1) Lus10041723 [exp] 288 / 6e-92 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10036116 [exp] 286 / 7e-92 AT5G03150 307 / 8e-100 JACKDAW, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 280 / 2e-89 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 280 / 3e-89 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10036573 [exp] 280 / 1e-88 AT1G03840 292 / 2e-93 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10008396 [exp] 278 / 1e-87 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017100 [exp] 411 / 8e-141 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 398 / 2e-135 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.016G088500 [exp] 299 / 2e-96 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.006G129300 [exp] 297 / 1e-95 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 294 / 3e-94 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.013G019200 [exp] 292 / 6e-94 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.005G215100 [exp] 290 / 2e-93 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G048000 [exp] 289 / 4e-93 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.007G028800 [exp] 290 / 1e-92 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G027200 [exp] 288 / 3e-92 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018633 pacid=23180455 polypeptide=Lus10018633 locus=Lus10018633.g ID=Lus10018633.BGIv1.0 annot-version=v1.0 ATGGCGACCAACAGATTCTTGTGCGAAATATGCGGGAAAGGGTTCCAGAGGGATCAGAATCTGCAGCTTCACAGGAGAGGACACAACCTGCCGTGGAAGC TCAAGCAGAGGACTAGCAAGGAGATCCGGAAGAGGGTCTACGTATGCCCCGAGAAGAGTTGTGTTCATCACCACCCATCAAGGGCACTTGGGGACTTGAC TGGGATCAAAAAGCACTTCTGTAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAGTGTGCAAAGAGGTATGCTGTTCAGTCTGACTGGAAAGCTCAC TCCAAGACTTGTGGCACTAGGGAGTACAAGTGTGACTGTGGGACTTTGTTCTCTAGGCGGGATAGTTTCATAACTCATCGAGCATTCTGCGACGCCTTGG CAGAAGAGACGGCAAGGATGAATGCAGCATCAAGCATAACAAGCTTTAGCACCCTCAGCAATTACAACAATCTAATGGGAGGCCAACATCACCACAACAA CAACATTATGAACCCTCATAATTTCTCTTCAATGTTCAAGCCAATGATCTCCTCCTCAAACACCAATGAACACCAACATCAGCATCAACATCAACATCCA GAGGAAGAAGAGGCAGAATTAGTACTTAACAATCAGCATCATCATCATCAGGACAGAAGTGGATCACTAGCGTTTTGGATGAACCAAGGTCTACACCAAC CCCAACATCAACAAGAAGTAATAGTACATGTCATGCCAAATGGTACTAGTACTAATACTAGCCACCAAGATCATCATCAGATTCAGCAACTTGGTGGGTC CATAACTTCAGGGGAAATGTTTGTCCCTTGCACATCATCAAACCCTCAATCTGATCACCAACACCAACACTTCGATTTAAGCTGGCCGATCGTCGGATTG AACAATGTGAAGGAATTAGGCCATGGTAGTACTGAGCTTCAAAGTGTCCCTTCATTGCATCAGCAAGCATCAGCAAACATGTCAGCCACAGCTTTACTAC AGAAAGCTGCTCAGATGGGAGCAACAAGCTCATCTGATAACCACCATCAAAGCAAGCTATGTGGGTTGTATGGTACTAGTACCAACTCAAATTGTACTAG TACTAGTAGTCTATTATTTGGGAGCCTTCATGAACTGGAGAGTCTCAACTCGAGTACTCATATGGATCAACTTGAGCAGATGCAAGTGATGTATCCACCA TTGAAGAGGCAGAGGACATTTCAAAGCAGTGATCAAGACTGTGGAGGTGGAGGGCAAACTAGGGATTTCCTTGGTGTTGGAGCTGTTCAAGCTGCAGCAG CCTTATGCCACCCATCTTCAATCAATGGATGGATCTAA
AA sequence Show only first row Show all	>Lus10018633 pacid=23180455 polypeptide=Lus10018633 locus=Lus10018633.g ID=Lus10018633.BGIv1.0 annot-version=v1.0 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAH SKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARMNAASSITSFSTLSNYNNLMGGQHHHNNNIMNPHNFSSMFKPMISSSNTNEHQHQHQHQHP EEEEAELVLNNQHHHHQDRSGSLAFWMNQGLHQPQHQQEVIVHVMPNGTSTNTSHQDHHQIQQLGGSITSGEMFVPCTSSNPQSDHQHQHFDLSWPIVGL NNVKELGHGSTELQSVPSLHQQASANMSATALLQKAAQMGATSSSDNHHQSKLCGLYGTSTNSNCTSTSSLLFGSLHELESLNSSTHMDQLEQMQVMYPP LKRQRTFQSSDQDCGGGGQTRDFLGVGAVQAAAALCHPSSINGWI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10018633 [exp]	0	1
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	18.3	0.7388
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	28.7	0.7562
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10028083 [exp]	32.0	0.7476
AT4G14180		ATPRD1	putative recombination initiat...		Lus10022584 [exp]	52.2	0.7085
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10014779 [exp]	56.7	0.7084
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	61.0	0.7152
AT3G02420			unknown protein		Lus10003064 [exp]	79.2	0.7062
AT3G14067			Subtilase family protein (.1)		Lus10008116 [exp]	117.0	0.7274
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	167.1	0.6843
AT5G47920			unknown protein		Lus10000281 [exp]	185.7	0.6762

Compare expression of checked genes

Lus10018633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.