Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44180 1210 / 0 HD Homeodomain-like transcriptional regulator (.1.2) AT1G28420 1037 / 0 HD HB-1 homeobox-1 (.1) AT4G12750 125 / 2e-28 Homeodomain-like transcriptional regulator (.1) AT4G03250 65 / 4e-10 HD Homeodomain-like superfamily protein (.1) AT5G08630 47 / 0.0001 DDT domain-containing protein (.1) AT1G73360 45 / 0.0006 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039870 [exp] 2859 / 0 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015325 [exp] 701 / 0 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 676 / 0 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10033644 [exp] 197 / 3e-56 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10017688 [exp] 191 / 4e-54 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10015400 [exp] 136 / 1e-35 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10016078 [exp] 149 / 2e-35 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10013979 [exp] 134 / 1e-34 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10012302 [exp] 140 / 6e-33 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016200 [exp] 1746 / 0 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 1726 / 0 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.011G057700 [exp] 1199 / 0 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.004G048675 [exp] 1153 / 0 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.014G173300 [exp] 163 / 3e-40 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.009G071700 [exp] 66 / 2e-10 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 63 / 1e-09 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.004G138900 [exp] 48 / 6e-05 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.007G135100 [exp] 44 / 0.0002 AT5G53980 85 / 3e-21 homeobox protein 52 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [flax] [poplar] DDT DDT domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10018634 pacid=23180482 polypeptide=Lus10018634 locus=Lus10018634.g ID=Lus10018634.BGIv1.0 annot-version=v1.0 ATGGAGGATTCCGGCGGCGTAGCTACTACTCCAGCTGGAGGTGGTGGATCTTCTTCTTCTCCTGCTATTGGTTCGGAGAAGAAGTCAGCTGAAGGGGATA ATAAGTCTAGTAAGCGGAAAATGAAGACTGCTTCTCAGCTGGAGGTTCTCGAGAGGACTTATGCAGCGGAAGCATATCCGCCGGAGGCATTGAGGATTGA GCTCTCGGCACAGTTGGGGCTGTCTGATCGTCAGCTGCAGATGTGGTTCTGCCATCGGAGATTGAAGGATAGGAAGAGTGCGCAAGGGAAGAGTCGACGC AAGGATTCTCCACCGGCTGCAACTGCTGCATTGCCTGCTACTGTACTACCTGGGGAGGAAATGATGGCTGTGAGTGAGGCATATAGGGAACATTTGCCAG CATCGGCATCAGCATCTACTTCACGGTCGAGTCCGTTCGGGCATGTGACGGATCCACGGCGATTAGTGGCTAGGACTCCCGGGGTAGCTGTTCCGAGGAT TAGTGGTGATCCTTTGACGGTGAAGAGGTACTATGAACCGCAGCACTCAATTCAAGAGCTTAGGGCAATAGCATTTGTCGAGGCGCAGTTGGGGGAACCA TTGAGGGACGATGGTCCCATTCTTGGGATGGAATTTGACTCCTTGCCGCCTGATGCGTTTGGCGCACTTATAGGGTCTGCTGCTACATTGGGGCATCAGA AGGCATCAGGACGACATTTCGAGTCCAACCTGTTTGAGCGATCTGATGCGAAAGCTACCAAGGGTCCTACAAGAGCGTTGCATGAGTACCAGTTTCTTCC CCCGCAGCCAAGTGTTGGGGCAGATGGATACGAGAGAACTGCTCCATTGTACTCGTATGGTTCACCTTCTGATAGTCATAGTACAAAAAATGTACCCTTA TCTGCTGGACGCCCCTTCATGCACGGAAATGAGCAATCATCTTCGGGATATGGATATCCGGGTCAATTGCCTAGTTTAAGTCTTATGCCCCAAGAAGTCC AGCAGGGCCATCATCTTTTGCTATCGTCTGGAGAGTTTGACACTGCCTCCCAAAGGAACACTTTTACAAACATGGAAATGGATGCACAGCTTGGTCCTCA TGCTGTCACTGCTTTGGAGAATCCATTTACATCATCTGACAGGAGGGTTGATCATACGGAGGATGTTTTGCGTATGGAAAGGAAGCGGAAGAGCGAAGAG GCAAGATTAGCACGTGAAGTTGACGCCCACGAAAAGAGAATTCGGAAAGAGCTTGAAAGGCAGGATATTTTGAGAAGAAAGAGAGAAGAGCAAATAAGGA AAGATCTAGAAAGACAAGAGCGTGAAAGAAGGAAGGAAGAAGAAAGAGTGATGCGTGAAAAGCAGAGAGAAGAAGAGAGATACCAGAAAGAGCAAAGGCG TGAAATGGAGCGTAGAGAGAAGTTCTTGCAGAAGGAATCTCTCAAAGCTGAGAGAATGAGACAAAAAGAAGAAATGCGCAGAGAGAAGGAGGTAGCAAGG CAAAAAGCTGCTACCGAAAGAGCTCATGCTCGAAGAATTGCAAAAGAATCCGTGGAGCTCATTGAGGATGAGAAATTGGAACTCATGGAGCTAGCTGCAT CAAGCAAGGGGTTGCCTTCACTGCTTGAGCTGGACTTGGAATCTTTGCAAAATCTTGATTTGTTTAGAGACGAGCTGTCAACATTCCCTCCCAACTCTGT GCCTTTGAGAAGGCCTTTTGCAGTTCAACCATGGAGCAACTCTGAGGAAAATATAGGAAACCTTCTTATGGTCTGGAGATTCATTATTACTTTCACTGAT GTTCTTGGTTTATGGCCATTCACTTTCGATGAGTTCGTCCAAGCTTTTCATGATTATGACCCAAGGCTTTTGGGTGAAATTCACGTGGCCTTGCTTAAAT CCATCATTAAAGATATTGAAGATGTGGCTAGGACACCAGCCTCTGGGCTTGGAACAAATCAGAATAGTAGTGGAAATCCTGGTGGTGGTCATCCACGGAT TGTTGAAGGGGCATATGCATGGGGTTTTGATATACGTAATTGGCAGTGCCACTTAAATCCACTCACATGGCCTGAAATATTAAGGCAATTCGGTCTTTCG GCTGGATTTGGCCCTCGACTGAAGAGAAGGAAAGTTGAGCAGTTTCGCGACGACAATGAGGTTTTTGTGGGTAACGATGGTAAAGATGTGATTAGTAATT TACGGAATGGAGTAGCTGCAAAGAATGCTGTTGCTATAATGCACGAAAGAGGTTTCGCAAATCCACGCAGATCTAGGCATCGCTTAACACCCGGCACTGT TAAATATGCGGCATTTCATATTCTTTCTCTCGAGGGGAGCAACGGTCTATCGATATTGGACGTAGCAGAGAAGATTCAGAAATCTGAATTGAGGGATCTT TCCACAAGCAAGACACCAGAAGCTTCAATTGCTGCTGCATTGTCGAGAGATACCAAGCTCTTTGAGAGAACAGCTCCATCCACATATTGTGTACGTACTC CATACAGGAAGGATCCTTTTGATGCTGAAGCTATACTTACTACCGCTAGGGAAAAAATCCAGATATTTAAAAGTGGTCTTGTGGAAGAAGATGCTGATGA AGCTGAAAGAGATGAGGACTCTGAGAGTGATGTAGCTGAGGATCCTGAGGTTGATGATTTAGATGGTGATTTAAATTCCAACAAAGAGAGTTACTGTTCT CCAGAATTAGGCAAGTTTGGTGTCCAGTCTTCAGTGGAAAATGGAAAGGACGAGAAAAATGATGTTAAAAAGGAACAGGTTTGCGCTGAAAAGGTTGATG GATCCTCTTCAGTGTGTCTCGAAAGTTCTAACCAATCGAAAGGTTCTGCTGCTGCTGTCGACCACACTGTCAGTGCTAAAGCGGTCTCGAGCATTGTTGA AAATACAGATATTGATGAAAGCAATCCTGGTGAACTGTGGGTTCAGGGATTAACGGAGGGTGAATACTCTGATCTGAGTGTCGAGGAGCGCCTCAATGCA TTGGTGGCATTGGTTGGTGTGGCAAATGAAGGGAATTCAATTCGTCTGGTCTTAGAGGAACGCCTAGATGCAGCAAATGCTTTGAAGAAGCAAATGTGGG CAGAGGCTCAACTTGATAAACGTCGTACAAAAGAAGATTATTTCCTAAAGCAATATTCACAATTTGCTGGAAATAAGATGGATCCTAACCTCTTAACTCC AGTGACAGAGGGTAGGCAGAGCCCACTGGTTACTCTTGATGAGAAAATCAAGACTACACCTCTTAGTGCTGTAGTTTCGCAGGAACAACCAAGGGACCTT GAGAATGATGTAAACCTTCATAAGAATTTTCCTTCTGAAGGGAATACTCAAATCCAGGATCTCCCAGTGGGTGCTGATAATCTTCCATACCATCATTTAG GACACGTCACTGAAAGATCCCGGTCACAGTTAAAATCTTTCGTCAACCACAAGGCTGAAGAAACTTATGTATATAGATCACTGCCTCTTGGTCTAGATCG CAGACGCAATCGATACTGGCAATTTATAACGTGTCCATCTCGTAATGATCCTGGTTGTGGCAGAATCTTTGTTGAGTTACATGATGGTCGTTGGAGGCTT ATCGACTCAGAAGAGGGTTTTGATTCTCTTTTAGCATGTTTGGATGTCCGTGGCATGAGAGAATCCCATCTGCACTTCGTGTTGCGAAGGATTGAAAAAT CATTCAAGGAAACTGTCCGGAGGACTTTGCTTCAAGCTAAGACGGAGAATTCTGTCACTAATGGCGATGATAGCCCTAGAAGTGCTGTTTGTCCAACTGA CTCTGATGCATCTGAGACCTCTACTTCATTTTCTATAGAACTCGGAGGAAATAGGAGCGAGAGGAATAGTTCCTTGAAGAGATACTGCGATTTCGAGAGG TGGATGTGGAAAGAATGCTCTAGTACAACACTATTGTCTGCAACAAAGTATGGGCAGAAAAGATGCACGCAGCTGTTAGGGGTTTGTGCTGACTGCCATG ATATTTATTTTTCAGAAGATGACTCGTGGTGTTCTTCGTGCAATAGAGCACCTGATCCCACCAAGACGATCGATGATCTTCCTCAAAATTTTAATAATTA TGCTCCTGTGAGGAGCCGGGTTCTTAAATTGCTATTAGCTTTGATTGAGGTTTCGCTCCCGCCTGAAGCTCTTGAATCTTTCTGGACAAGTGCTCTTAGG AAATCATGGAGTAAGAAGTTGTCGTCAATGTCATCAGCTGAAGAGCAACTTCAGGCGCTAACTGTGTTGGAGGCTGCTCTAAGGAAGGACTATCTATTGT CCAACTTCGAAACAACAAGTGAACTGTTGGGAATGTCCGACCCACCGGGATTCGATGCTGCTACTATTTCCTCAAGTATGGACATGGTCCCTCTACTTCC ATGGTTGCCACGAACAACAGCAGCTGTTGCTCTAAGAGTCATGGAGTTCGATGCATCCATTGCCTATGTTCTCCAGCAGAAAGTGAAATTGGAGGAGGAT AAAATTGCCGGGGACTTCAGTGCTGTTGCGAATAGCTCGTACAGTATCCAGACAACTGGAACGTTCCATAAAGGCGGAGCGTATCAAGAGGATAGTTGGG TTGACGTTGGGAATGGTTCGGGTGGGTTCAGCAGTGGACGAGCATACCGTGGGGGACGGGGTCGCAAGAGATTAGCTCATAGTGGACCGCAATCCCAGAG AAAGGTCACCGGCCCAAGATCAGACTCGCGCAAAAGAAACACGGTATCATCGGGGTTGGCATGGAAAGGACGACCTCGAGTACGCGGTGGGCGGAAACGT GGACGGGGCAGTGCCGGAAGCCGACAGAAATCGGCAGCCAAGACTACTGTAACCGTAATTGCCCCGCAAAGAGAGACCTTGAAAGAAACTGTCTTTGAGA AACCAAGAGACGAATGGAACGAAGAAGCGAGGTTCCCGGTGGAGGTGGATGAAAATGCCAGTAGCTCAGAGAGATCAGATTGCGACGACGAGATTGGGAA ACTCGGAGACTTCCAGCCTCTAAGCGATGACGATATGGAGGTGAACGAGGACGACCAAGACGAGTACCGGGAGGAAGAGGAAGAGGAAGAGATGGATGAA TATGAATATGAAGATGAAGAGAGGAATCTGGAAGTTGATGGATACATAAATGCAGAATCCGATGAAGAGATGGACGAAATGCAAAACGAGGATCGAGACC CGGATGGGACGGCTTCTTCTTCGGATTTCAGTGATTAG
AA sequence Show only first row Show all	>Lus10018634 pacid=23180482 polypeptide=Lus10018634 locus=Lus10018634.g ID=Lus10018634.BGIv1.0 annot-version=v1.0 MEDSGGVATTPAGGGGSSSSPAIGSEKKSAEGDNKSSKRKMKTASQLEVLERTYAAEAYPPEALRIELSAQLGLSDRQLQMWFCHRRLKDRKSAQGKSRR KDSPPAATAALPATVLPGEEMMAVSEAYREHLPASASASTSRSSPFGHVTDPRRLVARTPGVAVPRISGDPLTVKRYYEPQHSIQELRAIAFVEAQLGEP LRDDGPILGMEFDSLPPDAFGALIGSAATLGHQKASGRHFESNLFERSDAKATKGPTRALHEYQFLPPQPSVGADGYERTAPLYSYGSPSDSHSTKNVPL SAGRPFMHGNEQSSSGYGYPGQLPSLSLMPQEVQQGHHLLLSSGEFDTASQRNTFTNMEMDAQLGPHAVTALENPFTSSDRRVDHTEDVLRMERKRKSEE ARLAREVDAHEKRIRKELERQDILRRKREEQIRKDLERQERERRKEEERVMREKQREEERYQKEQRREMERREKFLQKESLKAERMRQKEEMRREKEVAR QKAATERAHARRIAKESVELIEDEKLELMELAASSKGLPSLLELDLESLQNLDLFRDELSTFPPNSVPLRRPFAVQPWSNSEENIGNLLMVWRFIITFTD VLGLWPFTFDEFVQAFHDYDPRLLGEIHVALLKSIIKDIEDVARTPASGLGTNQNSSGNPGGGHPRIVEGAYAWGFDIRNWQCHLNPLTWPEILRQFGLS AGFGPRLKRRKVEQFRDDNEVFVGNDGKDVISNLRNGVAAKNAVAIMHERGFANPRRSRHRLTPGTVKYAAFHILSLEGSNGLSILDVAEKIQKSELRDL STSKTPEASIAAALSRDTKLFERTAPSTYCVRTPYRKDPFDAEAILTTAREKIQIFKSGLVEEDADEAERDEDSESDVAEDPEVDDLDGDLNSNKESYCS PELGKFGVQSSVENGKDEKNDVKKEQVCAEKVDGSSSVCLESSNQSKGSAAAVDHTVSAKAVSSIVENTDIDESNPGELWVQGLTEGEYSDLSVEERLNA LVALVGVANEGNSIRLVLEERLDAANALKKQMWAEAQLDKRRTKEDYFLKQYSQFAGNKMDPNLLTPVTEGRQSPLVTLDEKIKTTPLSAVVSQEQPRDL ENDVNLHKNFPSEGNTQIQDLPVGADNLPYHHLGHVTERSRSQLKSFVNHKAEETYVYRSLPLGLDRRRNRYWQFITCPSRNDPGCGRIFVELHDGRWRL IDSEEGFDSLLACLDVRGMRESHLHFVLRRIEKSFKETVRRTLLQAKTENSVTNGDDSPRSAVCPTDSDASETSTSFSIELGGNRSERNSSLKRYCDFER WMWKECSSTTLLSATKYGQKRCTQLLGVCADCHDIYFSEDDSWCSSCNRAPDPTKTIDDLPQNFNNYAPVRSRVLKLLLALIEVSLPPEALESFWTSALR KSWSKKLSSMSSAEEQLQALTVLEAALRKDYLLSNFETTSELLGMSDPPGFDAATISSSMDMVPLLPWLPRTTAAVALRVMEFDASIAYVLQQKVKLEED KIAGDFSAVANSSYSIQTTGTFHKGGAYQEDSWVDVGNGSGGFSSGRAYRGGRGRKRLAHSGPQSQRKVTGPRSDSRKRNTVSSGLAWKGRPRVRGGRKR GRGSAGSRQKSAAKTTVTVIAPQRETLKETVFEKPRDEWNEEARFPVEVDENASSSERSDCDDEIGKLGDFQPLSDDDMEVNEDDQDEYREEEEEEEMDE YEYEDEERNLEVDGYINAESDEEMDEMQNEDRDPDGTASSSDFSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	0	1
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014547 [exp]	1.0	0.8979
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	2.4	0.8907
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	5.0	0.8407
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	5.0	0.8775
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	6.3	0.8930
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	7.5	0.8591
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	7.7	0.8777
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	7.9	0.8767
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	9.5	0.8771
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	9.8	0.8372

Compare expression of checked genes

Lus10018634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.