Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46090 149 / 8e-45 Protein of unknown function (DUF679) (.1) AT4G18425 140 / 1e-41 Protein of unknown function (DUF679) (.1) AT3G02430 112 / 1e-30 Protein of unknown function (DUF679) (.1) AT4G24310 111 / 3e-30 Protein of unknown function (DUF679) (.1) AT3G21550 107 / 4e-29 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT5G27370 96 / 1e-24 Protein of unknown function (DUF679) (.1) AT3G21520 95 / 8e-24 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT1G09157 89 / 2e-21 Protein of unknown function (DUF679) (.1) AT5G39650 87 / 1e-20 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT4G28485 0 / 1 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033645 [exp] 192 / 9e-62 AT5G46090 208 / 2e-68 Protein of unknown function (DUF679) (.1) Lus10017689 [exp] 187 / 8e-60 AT5G46090 197 / 8e-64 Protein of unknown function (DUF679) (.1) Lus10039871 [exp] 150 / 9e-47 AT5G46090 122 / 3e-36 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 152 / 8e-46 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 151 / 2e-45 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 146 / 2e-43 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 146 / 2e-43 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 145 / 3e-43 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 132 / 4e-38 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016300 [exp] 173 / 2e-54 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 160 / 4e-49 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 156 / 3e-47 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 117 / 2e-32 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 111 / 2e-30 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.010G168400 [exp] 108 / 5e-29 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.008G087000 [exp] 107 / 3e-28 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.008G115100 [exp] 102 / 4e-27 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.004G223500 [exp] 103 / 8e-27 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 101 / 2e-26 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10018635 pacid=23180474 polypeptide=Lus10018635 locus=Lus10018635.g ID=Lus10018635.BGIv1.0 annot-version=v1.0 ATGGAAACACCAGAAGAACACAAGCAACCCTTTCTTGGGGACCAAACGCCGCCATTACCAACCTCAACGTCACCGACGTCGCCATCCATGACGCCATATA CGCAGGAGGCGCCAGTGCCGGTGCCGCCTATTACTAAGAAGGCGAAGAAACGGCCGGCGAGGAAGGCGATTAAGAAGACATTCAAGGCGACAGCTTTGCT GACTAAGCTTCTCCCGACAGGGTCCGTTCTTGCATTTCAAATCATGTTGCCGATCATTACAAACCAAGGGAGATGTCTCACACCGATGAACAGATACATG ATGTTGTGTCTTCTGATTCTGTGCGGACTTTCTTGTTTCTTTCAATGCTTGACGGATAGTTTCAAGGATGCTAAGGGCAAAGTCAGGTATGGCTTGGCGA CTTTCAACGGATTGTGGGTGATGGACGGATCAATGAAGCTATCCTCCGAGGAAGCGAGTCGATACAAGTTGAGGTTCTTGGATGTGTTCCACGCGACGAT GAGCGTGATGGTGTTCTGTGCGGTGGCATTGTTCGAGAAGAACGTCGTGAGCTGCTTGTTCCCCGAGCCGGCAGAGGAAACGAAGGGGTTGCTCTCTAAG TTGCCGTTTGGAGTTGGGTTGGTCGGCAGCTTGTTGTTCCTTGCCTTCCCTACTAAACGACATGGAATTAGCACCCCTGTATCTCAATAA
AA sequence Show only first row Show all	>Lus10018635 pacid=23180474 polypeptide=Lus10018635 locus=Lus10018635.g ID=Lus10018635.BGIv1.0 annot-version=v1.0 METPEEHKQPFLGDQTPPLPTSTSPTSPSMTPYTQEAPVPVPPITKKAKKRPARKAIKKTFKATALLTKLLPTGSVLAFQIMLPIITNQGRCLTPMNRYM MLCLLILCGLSCFFQCLTDSFKDAKGKVRYGLATFNGLWVMDGSMKLSSEEASRYKLRFLDVFHATMSVMVFCAVALFEKNVVSCLFPEPAEETKGLLSK LPFGVGLVGSLLFLAFPTKRHGISTPVSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46090			Protein of unknown function (D...		Lus10018635 [exp]	0	1
					Lus10018996 [exp]	2.0	0.9777
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10035974 [exp]	2.4	0.9824
AT1G73110			P-loop containing nucleoside t...		Lus10024092 [exp]	2.8	0.9755
					Lus10038743 [exp]	4.6	0.9774
					Lus10030762 [exp]	5.5	0.9589
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10034790 [exp]	6.3	0.9749
					Lus10033284 [exp]	6.9	0.9479
AT3G19550			unknown protein		Lus10013901 [exp]	10.2	0.9497
					Lus10038154 [exp]	10.6	0.9248
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	11.0	0.9383

Compare expression of checked genes

Lus10018635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.