Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46070 506 / 1e-161 Guanylate-binding family protein (.1) AT1G03830 176 / 8e-45 guanylate-binding family protein (.1.2) AT2G38840 80 / 4e-15 Guanylate-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015327 [exp] 565 / 0 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 563 / 0 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 542 / 9e-176 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10015390 [exp] 535 / 7e-173 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10018755 [exp] 79 / 2e-14 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10014720 [exp] 77 / 3e-14 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 77 / 6e-14 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 67 / 5e-12 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016800 [exp] 624 / 0 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 583 / 0 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1) Potri.004G049400 [exp] 573 / 0 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.005G168402 [exp] 69 / 2e-14 AT5G46070 116 / 5e-32 Guanylate-binding family protein (.1) Potri.002G046000 [exp] 76 / 6e-14 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 69 / 1e-11 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02841 [flax] [poplar] GBP_C Guanylate-binding protein, C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02263 [flax] [poplar] GBP Guanylate-binding protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018638 pacid=23180487 polypeptide=Lus10018638 locus=Lus10018638.g ID=Lus10018638.BGIv1.0 annot-version=v1.0 ATGCTGGAAGCAGAGAAAGGACAGTCTTCTTCTTGGTTTCCGTCAATGTCAAACAACAGTCCCGATTCTGAAGGAAAGCTGCTACGCCTTGTGTACTGCG ATGAGAGTGGCAACTTGAAGACCGACCCAGATGTTCTTCGAGCCCTTAGGGAGATTCAGGGCCCTGCCGCCGCCGTCTCCGTTTGTGGGCCTTCCCATCC CACTACTCAAAACTCAGTCTTCAACGAGCTTGTTGGTAGGAATGCTAGACATGATATTGCGTCAAAGGACCGTTCACCACGGGAAGGAGGGCTTTGGATG TGGAGTGTCCCATTGAAGAGAAAGACAGTTGATGGGTCTCAATACAATGTGATCTTTCTGGATGGTGAAGGCCTTGATGCTTGTGATCAAACAGCCGCGC ACAACATGCAGATTTTCTCTTTGGCCGTCCATTTGTCAAGCACTGTTGTCTACAATCTGGTGAGCCCTCATTGGCGCCCTATTGACCTTCTCATGGGTGG CATTGATGAAACGTCTTCTGATGATCGCTCTTTTGCCGCTGAGACATCTAAACACATACGCACTAAGGTGTATGGAGCAAAAGATACAATTTCCGAGCTA GGACAGTTCTCCCCATCATTTGTTTGGCTTCTAAAGGACCTCCAGTCAGACACAACCAGAGCTGCCCAGAAGATGATGGCTACCGATCATCAAGAGCATT TTCGGGGATCAGCTTCAGCTGTTCAAAAAGATGCAGCTCCTGCGAATGATATCTGCGAGTCCTTCCGGGGTATTTTCTCAGACAAAGAATGCTTTGCCCT GGTGAGGTTGTTGAAAGACGAAAATGGCCTTCAATATCTTGGCTGTGCTATGTTGGAGCAATTTCAGTCAGAACATCAATCCGAGCTTGCTGCTTTGACG AAGTTTGCTTATGAAAAAGCCGTGCCTAAGCAAGTTGGGGGTACAGTCATTACAGGATCTGTTCTTGCCAGCATTATAGAATGTTACATCGATGCCCTTA ACAGCGGTGCTAGTAGTACTGTGGCTTCCCTTTGGCAGGACGTGGCAGAGTCAGAGTGCAGAAGGGCATTTCAGGCAGCAATGAGAGTTTACAACTCTGT TTTCAACCAAGCAAAGCGTCTAGAAGAAGTTCCCGTTGAACAAGCTCATAGCAGAGCACTTCAAAGCTCGGTTGCCACGTATCATGCTGGAGCTGTAGGG CCTGGTTTGGCTAGAAGAAAATATGAAATGCTTCTCCAAGATTTCTTTGATAATTCATATAAGGAGGCTCAAAATAATGCAGATTTGCATTTTTCAAGTG CTATTGATAAGATGAAGAATGGATTTGAATCGGCTTGCCAGGGTCCTGCTGTGAAGTTTGATGATATAAATAAGGTTCTTGATGGCATCCTATTGGAATA TGAAGCATTGGAACGTTCAGAAAAATCCGATCAACCGTCCTTAACGAGAAGCATGCTAGGTCCATTATTTGAACACTTCAAGAAGGCGATTGGTACGGTC TTATCAGAGAAGGATGTTCTCATGTCAAAATGCTGCACGATGGAAGAGAAGGAAGCATTGCTCCGAAAGAATTTGGAAGCAAGCGAGAAGTTGAAATCCG AGTATCAAGTCCGTTACGAAGATGCCATAAGGGACATGAATAATCTGTCCCGTCATTATAAGAACCGGATCATGGAAATCGAGAGCAATTGCCGTTCATT GGAAGGTAAATGTTCGAGCTTGCACGAAATGCTGGACTGCGCGAAGCAAGAGTCCCTGGACTGGAAATGCAAGTATGAAGAAGTGTTATTTACTAAGAGG AAAGATGTTGAAGATGATCTGAATGATATTGAAGCGGGTTCGAAATCTTCTGATGCTCGTAGACATAGTTGGTGTCCGGAGTCCAAAAGCACTGCTGATC AAGGTCAGTCGGTGTTCACAGAGGCACGACAATGGAAAGACAAATATGATCTTGCTGTTAATGAAGCCAAGGTCGCCGCGGAAAAGGCAGAGAAGGAGGT TAAGAGCTTAACTGACGAAGCAAAACTTAGAGAAGAAGCTCTGAGAATTGAATTCTCCAATAGCTTAGCAAAGAAGGATGAGGAAGTTGAAAATTTGATG GTGAAAGTTGAAGATACAGAACAAAGATTGAATACTCTAACGTTGGAAGTCCAGGCTGCTGAAGAAAAGATGCGTGCCTACGGAAAGGAGACATCGGATT CGAAGCTTCAGTGGAAGAAACTGAATGATAAGTATGAGTCTGTCAAAGCATCTGTCCAGTTACTGGAAAGTGAAGCACAGATAAAGTCACAAGAAAAGGC AGAACTCGAGCAGAAGTACCTTGCTGAGTCGAAACGACTTGAGGAAATCCAGCTCAGGTGTAAGCTTGCAGAGGAGAAACTTAATGCAGCTCAGATGAGG TTACAGGAAAAAACTGACCTCGAGCAGAAGTATCTCTCCGACTCGAAAAGACTCGAGGCAAAGTGTGAATTGGCAGAAGAAGAAGTCAATGCAGTTCGGA TCGAGTTACAGGAAAAGATCGAATATGAGCACAAGTACATGGTCGAACTAGAAACACTCAGGGAAACCCACGAAAACTGCAATGAGCCTAAAACAGAACA GTTAGAAGAGATGCTGAAAAACAGAGACGAAGAAATAGGGCAATGGAAAACAAAGTGCGAAGCTTTGGAGGACATGCTGCGGTCAGGAGGTGTAGTTAAT CATCCACCTTTCGAGCCAGGTTCACTGGAGGCACAACTTCAGTCGATTCAGCAACATCTGTATTCCGAAGACCAAGTGGACGAGACGGTACTTTCAACTC CTTCGAAACGAGCGTGGTTGGAGGTTGCCACACCAGCAGAGAGCCTGGCATCCGATGGAGGAGCAATATCTAGGAAAAGACGGAGGAAGGGCGAGATCAT GATGATGTCATCCTCCTTGCAGAAATGCACGTCAATCGAGGCAGGCAGCGAGTCCACCATGAAGGCAGGTGAAGAGGAGGATGGTGCTGAGAGCCAGAAA GCTAGTTCGGTCAACTACGCGAGGTTGACTGTGGCGAGAATGCGGCAGGAACTCAACGAAGGAGGCTACGGAGGCGAATTGCTGAAGCTGAAGGGTGCCA AGAAGAAAGACATCTATGCCCTTTATAAAAAACACATCCTCAAGAACTGA
AA sequence Show only first row Show all	>Lus10018638 pacid=23180487 polypeptide=Lus10018638 locus=Lus10018638.g ID=Lus10018638.BGIv1.0 annot-version=v1.0 MLEAEKGQSSSWFPSMSNNSPDSEGKLLRLVYCDESGNLKTDPDVLRALREIQGPAAAVSVCGPSHPTTQNSVFNELVGRNARHDIASKDRSPREGGLWM WSVPLKRKTVDGSQYNVIFLDGEGLDACDQTAAHNMQIFSLAVHLSSTVVYNLVSPHWRPIDLLMGGIDETSSDDRSFAAETSKHIRTKVYGAKDTISEL GQFSPSFVWLLKDLQSDTTRAAQKMMATDHQEHFRGSASAVQKDAAPANDICESFRGIFSDKECFALVRLLKDENGLQYLGCAMLEQFQSEHQSELAALT KFAYEKAVPKQVGGTVITGSVLASIIECYIDALNSGASSTVASLWQDVAESECRRAFQAAMRVYNSVFNQAKRLEEVPVEQAHSRALQSSVATYHAGAVG PGLARRKYEMLLQDFFDNSYKEAQNNADLHFSSAIDKMKNGFESACQGPAVKFDDINKVLDGILLEYEALERSEKSDQPSLTRSMLGPLFEHFKKAIGTV LSEKDVLMSKCCTMEEKEALLRKNLEASEKLKSEYQVRYEDAIRDMNNLSRHYKNRIMEIESNCRSLEGKCSSLHEMLDCAKQESLDWKCKYEEVLFTKR KDVEDDLNDIEAGSKSSDARRHSWCPESKSTADQGQSVFTEARQWKDKYDLAVNEAKVAAEKAEKEVKSLTDEAKLREEALRIEFSNSLAKKDEEVENLM VKVEDTEQRLNTLTLEVQAAEEKMRAYGKETSDSKLQWKKLNDKYESVKASVQLLESEAQIKSQEKAELEQKYLAESKRLEEIQLRCKLAEEKLNAAQMR LQEKTDLEQKYLSDSKRLEAKCELAEEEVNAVRIELQEKIEYEHKYMVELETLRETHENCNEPKTEQLEEMLKNRDEEIGQWKTKCEALEDMLRSGGVVN HPPFEPGSLEAQLQSIQQHLYSEDQVDETVLSTPSKRAWLEVATPAESLASDGGAISRKRRRKGEIMMMSSSLQKCTSIEAGSESTMKAGEEEDGAESQK ASSVNYARLTVARMRQELNEGGYGGELLKLKGAKKKDIYALYKKHILKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	0	1
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	1.4	0.8055
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	7.1	0.7350
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10020668 [exp]	7.2	0.7381
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	8.4	0.7918
AT5G59830			unknown protein		Lus10024426 [exp]	10.2	0.7510
AT3G26950			unknown protein		Lus10035181 [exp]	18.2	0.7086
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	18.8	0.7306
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	21.2	0.7120
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	22.1	0.7812
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	22.8	0.7493

Compare expression of checked genes

Lus10018638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.