Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27740 676 / 0 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2) AT5G57890 70 / 3e-13 Glutamine amidotransferase type 1 family protein (.1) AT1G25220 70 / 3e-13 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT1G25155 68 / 6e-13 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 68 / 6e-13 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 68 / 6e-13 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 66 / 3e-12 Glutamine amidotransferase type 1 family protein (.1) AT1G63660 49 / 5e-06 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039874 [exp] 873 / 0 AT3G27740 678 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10030761 [exp] 69 / 1e-12 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10013241 [exp] 67 / 3e-12 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10024632 [exp] 42 / 0.0008 AT1G63660 909 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080900 [exp] 745 / 0 AT3G27740 647 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.001G153400 [exp] 738 / 0 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.010G102200 [exp] 72 / 5e-14 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.008G138800 [exp] 68 / 1e-12 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.003G128200 [exp] 42 / 0.001 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I CL0364 [flax] [poplar] Leu-IlvD PF00988 [flax] [poplar] CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain
Representative CDS sequence Show only first row Show all	>Lus10018639 pacid=23180429 polypeptide=Lus10018639 locus=Lus10018639.g ID=Lus10018639.BGIv1.0 annot-version=v1.0 ATGGAGCTTGCGTTCGCTAATCCTTCATCCACCTCATTATTCACCATCAGCAAAGCTTCACCAATCTTCTTCAAACCCGGACCCCCCAAGGTTTTCACCC TCCGCTGCTCTTCCAACTCACCCGCCGCCGCTGCCGGTGTGGTGGAAAGGCCCTGGAAAACTTCAGATGCTAGGCTTGTGCTTGAAGATGGCTCTGTGTG GAAGGCCAAGTCGTTTGGTGCCACTGGTACTCAAGTTGGTGAAGTCGTTTTCAACACCTCCATGACAGGGTATCAGGAGATCCTCACGGATCCTAGTTAT GCTGGCCAATTTGTGCTGATGACTAACCCGCACATCGGCAACACTGGAGTGAACCTCGATGACGAAGAATCGATGCAGTGTTTCCTTGCCGGTTTGGTGA TCAGGAGCTTAAGCATTAGCACATCGAATTGGAGATGCACCAAAACTCTTGGCGATTATTTAACAGAGAGGAACATAATGGGGATATATGATGTGGACAC TCGTGCGATCACTCGGAGATTGAGGCAAGATGGGAGCCTTATTGGTGTGCTCAGCACCGAACAATCGAAGAGCGATGAACAACTCCTCGATATGTCTCGC TCGTGGGATATCGTAGGTGTCGATCTTATAAGTGGTGTATCATGCACAGAACCTTATGAATGGGTCGATAGAACGAAATCGGATTGGGATTTCAATACCG AGGGAACCGGAGAGGTCTTCCATGTTGTTGCTTATGATTTCGGGGTGAAACACAACATTCTGCGACGATTAGCTTCGTATGGCTGCAAAATCACCGTAGT CCCTTCCAACTGGTCAGCTTCAGAGACCCTAAGGATGAACCCGGACGGAGTTCTCTTCAGCAATGGCCCGGGCGACCCCTCTGCAGTACCTTACGCGGTC GAAACAGTCAAGAACTTGCTTGGTAAAGCTCCGGTCTTTGGAATTTGCATGGGCCACCAATTGCTAGGGCAAGCATTAGGTGGCAAGACCTTCAAGATGA AGTTTGGTCACCACGGAGGAAACCACCCCGTTCGCAACACCCGTGCTAACCGTGTCGAGATTAGCGCTCAGAATCACAACTATGCAGTCGACCCGGCATC ACTCCCTGAAGGTGTGGAAGTGACTCACATCAATCTTAACGATGAAAGTTGCGCTGGACTAGCTTTCCCTGCCTTGAAGGTTATGTCTCTTCAGTACCAT CCCGAAGCATCTCCAGGCCCTCACGACTCCGACACCGTTTTCAGGGAATTCGTCGAGCTCATGAAGCAATCCAAGCAAAAAGCATAG
AA sequence Show only first row Show all	>Lus10018639 pacid=23180429 polypeptide=Lus10018639 locus=Lus10018639.g ID=Lus10018639.BGIv1.0 annot-version=v1.0 MELAFANPSSTSLFTISKASPIFFKPGPPKVFTLRCSSNSPAAAAGVVERPWKTSDARLVLEDGSVWKAKSFGATGTQVGEVVFNTSMTGYQEILTDPSY AGQFVLMTNPHIGNTGVNLDDEESMQCFLAGLVIRSLSISTSNWRCTKTLGDYLTERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEQSKSDEQLLDMSR SWDIVGVDLISGVSCTEPYEWVDRTKSDWDFNTEGTGEVFHVVAYDFGVKHNILRRLASYGCKITVVPSNWSASETLRMNPDGVLFSNGPGDPSAVPYAV ETVKNLLGKAPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNTRANRVEISAQNHNYAVDPASLPEGVEVTHINLNDESCAGLAFPALKVMSLQYH PEASPGPHDSDTVFREFVELMKQSKQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	0	1
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	2.0	0.9606
AT1G04340			HR-like lesion-inducing protei...		Lus10021205 [exp]	4.9	0.9488
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	5.3	0.9530
AT4G11010		NDPK3	nucleoside diphosphate kinase ...		Lus10032392 [exp]	5.5	0.9358
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	7.1	0.9553
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	7.3	0.9566
AT5G57280		RID2	root initiation defective 2, S...		Lus10007484 [exp]	8.6	0.9338
AT5G20600			unknown protein		Lus10027609 [exp]	9.2	0.9499
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	9.8	0.9376
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	10.4	0.9409

Compare expression of checked genes

Lus10018639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.