Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44170 296 / 4e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G08125 86 / 1e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039876 [exp] 238 / 2e-80 AT5G44170 244 / 5e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039875 [exp] 127 / 6e-38 AT5G44170 102 / 6e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021425 [exp] 81 / 1e-17 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10016141 [exp] 56 / 3e-09 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10031894 [exp] 44 / 7e-05 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017000 [exp] 283 / 2e-97 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G006800 [exp] 85 / 3e-19 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018640 pacid=23180385 polypeptide=Lus10018640 locus=Lus10018640.g ID=Lus10018640.BGIv1.0 annot-version=v1.0 ATGAAGTTCACAGACTCGCCGGTGATCGATCTCCAAATCGGCGACAAACACCTCTCAATTCAACAAGACAACGGCTCGATGCACGTCGGCACCTCCGTCT GGCCCTGCTCCCTAGTCCTCGCCAAGTTCATCGACCGCTGGTCGGCAGCATCACAGGTACCCTCCAGCTCCACCTCCGCCGCGGAAAACCCTTACTCCTC CCTCCTGGACTTTCGCTCCAATCGCCGCCGCGCAGTCGAGCTAGGGACAGGATGCGGAGCCGCCGGGATGGCGCTCCACCTACTCGGGCTCACCGACATC ATCCTTACAGACATGTCGCCCGTGATGCCGGCGCTGAAGCACAACCTCAAGCGGAACAAGCAAACCCTAGGTAAGATGCTGAAAACCTCGATACTGTACT GGAACAATCAGGACCAGATGCGATCGCTTAATCCGCCGTTCGACGTGGTGGTAGCGGCAGACGTGGTGTACATCGAAGAGTCTGTCGGGCAGCTTATCGG AGCTATGGAGTCCCTGATGGCCGACGACGGCGTGGTGCTGCTAGGGTATCAGTTGAGGTCTCCAGAAGCTCATAAGCTGTTCTGGGAAATGTCCGAGGAG GTTTTCGAGATCGAGAAGATTCCTCATGGAGATTTGCATCCCGATTATTCCTACGAAGAGACTGATGTCTACGTTTTCCGCAAGAAGAAGAAACAACAGT AG
AA sequence Show only first row Show all	>Lus10018640 pacid=23180385 polypeptide=Lus10018640 locus=Lus10018640.g ID=Lus10018640.BGIv1.0 annot-version=v1.0 MKFTDSPVIDLQIGDKHLSIQQDNGSMHVGTSVWPCSLVLAKFIDRWSAASQVPSSSTSAAENPYSSLLDFRSNRRRAVELGTGCGAAGMALHLLGLTDI ILTDMSPVMPALKHNLKRNKQTLGKMLKTSILYWNNQDQMRSLNPPFDVVVAADVVYIEESVGQLIGAMESLMADDGVVLLGYQLRSPEAHKLFWEMSEE VFEIEKIPHGDLHPDYSYEETDVYVFRKKKKQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	0	1
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	1.0	0.8531
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	1.7	0.8380
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10013179 [exp]	2.0	0.8497
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	2.0	0.8351
AT3G13677			unknown protein		Lus10015813 [exp]	3.7	0.8144
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	3.9	0.8254
AT3G58110			unknown protein		Lus10002186 [exp]	6.2	0.7860
AT2G02510			NADH dehydrogenase (ubiquinone...		Lus10005182 [exp]	6.7	0.7725
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	8.5	0.8053
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10041328 [exp]	9.4	0.8111

Compare expression of checked genes

Lus10018640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.