Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28490 296 / 7e-102 OSM1, ATSYP61, SYP61 syntaxin of plants 61 (.1.2) AT1G79590 45 / 1e-05 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) AT1G16240 44 / 5e-05 ATSYP51, SYP51 syntaxin of plants 51 (.1.2.3) AT1G27700 41 / 0.0004 Syntaxin/t-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039880 [exp] 414 / 2e-147 AT1G28490 271 / 4e-91 syntaxin of plants 61 (.1.2) Lus10017686 [exp] 346 / 3e-121 AT1G28490 299 / 8e-103 syntaxin of plants 61 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050800 [exp] 343 / 2e-120 AT1G28490 297 / 2e-102 syntaxin of plants 61 (.1.2) Potri.011G059700 [exp] 335 / 3e-117 AT1G28490 310 / 2e-107 syntaxin of plants 61 (.1.2) Potri.006G032800 [exp] 48 / 1e-06 AT1G79590 238 / 2e-79 syntaxin of plants 52 (.1.2) Potri.016G030100 [exp] 44 / 4e-05 AT1G79590 265 / 3e-90 syntaxin of plants 52 (.1.2) Potri.006G032900 [exp] 44 / 4e-05 AT1G79590 249 / 1e-83 syntaxin of plants 52 (.1.2) Potri.016G030200 [exp] 42 / 0.0002 AT1G79590 246 / 9e-83 syntaxin of plants 52 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09177 [flax] [poplar] Syntaxin-6_N Syntaxin 6, N-terminal PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10018642 pacid=23180506 polypeptide=Lus10018642 locus=Lus10018642.g ID=Lus10018642.BGIv1.0 annot-version=v1.0 ATGTCTTCCGCACAAGATCCTTTTCATATTGTGAAAGAGGAGATTCAGGACTCTGTTGATAAGTTGCTTTCGACATTTCAACAATGGGAACGGCTTCCTT CTAGTTCTGGAGAGCATGTCAGCCTCTCCAAGGAGCTCCTCGCTAATGGTGAGAGCATCGAGTGGCAGGTGGATGAGTTAGACAAAGCGATTTCTGTAGC AGCTAGAGATCCTGCTCTCTATGGCATTGATCATGTGGAACTTGAGAATCGAAGAAGATGGACAAGCAGTGCTCGCACTCAGGTAGGTAATGTGAAGAGG TCTGTGATAGCTGGAAGAGATGGTATTGATGGCGGAAGAACTAGCATGAATGGTATGCGGAGAGAACTTATGAGGCTGCAAAATTCGCCACAGCCAGTAG CATCCAACCAGTACAACCATAACGACGACTTCATACAATCTGAATCAGACAGACAATTCCTTCTTATCAAGCAACAGGACGAAGAGCTGGATGAACTTAG TGCAAGTGTAGAGAGAATTGGGGGTGTTGGGCTTACCATTCATGAAGAACTTCTTTCACAGGAAAAGATCATCGATGATCTAGGCAATGAAATGGACAGT ACAGCTAACCGACTCGATTTCATCCAGAAAAAAGTGGCGATGGTGATGAAGAAGGCGAGTTTCAAGGGACAATTGATGATGATCTTGTTTCTGGTAGTTC TGTTCATAATCCTGTTTGTGCTGGTCTTCCTTACTTGA
AA sequence Show only first row Show all	>Lus10018642 pacid=23180506 polypeptide=Lus10018642 locus=Lus10018642.g ID=Lus10018642.BGIv1.0 annot-version=v1.0 MSSAQDPFHIVKEEIQDSVDKLLSTFQQWERLPSSSGEHVSLSKELLANGESIEWQVDELDKAISVAARDPALYGIDHVELENRRRWTSSARTQVGNVKR SVIAGRDGIDGGRTSMNGMRRELMRLQNSPQPVASNQYNHNDDFIQSESDRQFLLIKQQDEELDELSASVERIGGVGLTIHEELLSQEKIIDDLGNEMDS TANRLDFIQKKVAMVMKKASFKGQLMMILFLVVLFIILFVLVFLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10018642 [exp]	0	1
AT2G22600			RNA-binding KH domain-containi...		Lus10012725 [exp]	3.7	0.7324
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	38.2	0.6943
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	55.1	0.6789
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	58.5	0.6871
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	63.1	0.6793
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10014181 [exp]	82.4	0.6225
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	84.5	0.6262
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	89.3	0.6311
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007201 [exp]	103.5	0.6487
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008042 [exp]	130.7	0.6408

Compare expression of checked genes

Lus10018642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.