Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029845 [exp] 47 / 2e-07 AT4G38080 40 / 6e-05 hydroxyproline-rich glycoprotein family protein (.1) Lus10018645 [exp] 44 / 5e-06 ND 35 / 0.004 Lus10018643 [exp] 43 / 7e-06 ND / Lus10018647 [exp] 41 / 3e-05 AT5G09520 45 / 5e-07 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1) Lus10039881 [exp] 37 / 0.0007 AT5G09520 44 / 1e-06 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018644 pacid=23180395 polypeptide=Lus10018644 locus=Lus10018644.g ID=Lus10018644.BGIv1.0 annot-version=v1.0 ATGGCATCTTCATCCAACTCCTTCTGCTTCTTCTTTACTCTCATCGTTGCTCTCTCATTCTCCAACATCAAACCGGGAATGGCGGCTCGCCAGCTCCTGC AGCTTCTGTCCACATTGCCTCCTCTGCCCTCCATCTCATCCCCCTCTGCCGGCGACATTCCTAGAATTCCGACCATTCCAAATCTGCCTGGATTGCCTCC ACTACCCTCCGCCGGTGACATTCCTAGAATTCCGACCATCCCAAATCTGCCTGGATTGCCTCCACCACCCTCCGCCGATGACATTCTCAGAATTCCGACC ATCCCAAATCTGCCTGGACTGCCTCCACTTCCGGCCTCCAACGACATTCTTCCTAGAATTCCTTCCATCCCAAGGGTTGCTCTGCCTCCTCTGCCTAGAG TTCTGCCAAGGATTCCGACTTTTTCCTTTACCATCCCCGGACTCACCCCTCCTGCTCCCGGAGGCAATTAA
AA sequence Show only first row Show all	>Lus10018644 pacid=23180395 polypeptide=Lus10018644 locus=Lus10018644.g ID=Lus10018644.BGIv1.0 annot-version=v1.0 MASSSNSFCFFFTLIVALSFSNIKPGMAARQLLQLLSTLPPLPSISSPSAGDIPRIPTIPNLPGLPPLPSAGDIPRIPTIPNLPGLPPPPSADDILRIPT IPNLPGLPPLPASNDILPRIPSIPRVALPPLPRVLPRIPTFSFTIPGLTPPAPGGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44224			ECA1 gametogenesis related fam...		Lus10018644 [exp]	0	1
AT5G57550		XTR3, XTH25, EX...	xyloglucan endotransglycosylas...		Lus10012834 [exp]	1.4	0.6861
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028003 [exp]	18.0	0.6154
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	31.6	0.5994
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036459 [exp]	63.4	0.5491
					Lus10038003 [exp]	70.7	0.5474
AT3G22640		PAP85	cupin family protein (.1)		Lus10042617 [exp]	72.7	0.5485
					Lus10028949 [exp]	76.5	0.5469
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	76.8	0.5684
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006697 [exp]	98.7	0.5363
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	107.6	0.5396

Compare expression of checked genes

Lus10018644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.