Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041676 [exp] 263 / 4e-89 ND / Lus10041677 [exp] 216 / 1e-70 ND / Lus10010387 [exp] 186 / 2e-60 ND / Lus10028987 [exp] 185 / 6e-59 ND / Lus10026135 [exp] 94 / 4e-23 ND / Lus10008678 [exp] 79 / 1e-17 ND / Lus10033372 [exp] 68 / 1e-13 ND / Lus10035524 [exp] 61 / 1e-11 ND / Lus10016944 [exp] 58 / 2e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018646 pacid=23180418 polypeptide=Lus10018646 locus=Lus10018646.g ID=Lus10018646.BGIv1.0 annot-version=v1.0 ATGGCACGCTATGCGTTGGACACAAGCAACAAATGGCTCCTTGCAATGTCGGACCGTACCATCAAGGTGATGGATCCGGGTACCGATGTCAACACCCACA ACCCCCCTACGACTGAACCTCAGTGGAACGAGGTGGCTCGGGTCGGGTCCAACGCTGCATCCACCCACATTGAACTCGAAGTGTGGGGGGTCGTCTTCTC CGGGAAAATCCTTGAAGACCTGTCCACTGAAATCATAAACCATCAATTATTCGTCAACCGCGAAGGGTTCATGGTTATGTACTTCAACGTGGGCGCCCCG AACATGTACCTGAACCTCAACGGACAGAGGAGCCTGGTCCGCCGCCTCAACGATCTCTTCGACTGGTCAAAGTACGGAGTCAACGTCCCACTCCCGCTCG AGACAGTGTGGGACCGGTACCAGTTGAACACGGGGAGGTTGATGGTGGACAACAAGCTCGCTGCGGAGGAGCTGAAGCAGTTGGCGGTGTTGCAGACGGA GAACCAGCAGCTCAAGAACGATTTGGCTGCTAAGGATAAGCGTATTCAGTCTCTGTCCGCTGCTCTCGCGGCATTCCTCTAA
AA sequence Show only first row Show all	>Lus10018646 pacid=23180418 polypeptide=Lus10018646 locus=Lus10018646.g ID=Lus10018646.BGIv1.0 annot-version=v1.0 MARYALDTSNKWLLAMSDRTIKVMDPGTDVNTHNPPTTEPQWNEVARVGSNAASTHIELEVWGVVFSGKILEDLSTEIINHQLFVNREGFMVMYFNVGAP NMYLNLNGQRSLVRRLNDLFDWSKYGVNVPLPLETVWDRYQLNTGRLMVDNKLAAEELKQLAVLQTENQQLKNDLAAKDKRIQSLSAALAAFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018646 [exp]	0	1
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	6.2	0.8662
					Lus10028788 [exp]	8.9	0.8453
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013936 [exp]	9.9	0.8190
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	10.2	0.8224
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	13.6	0.8490
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010105 [exp]	15.2	0.7579
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10000709 [exp]	16.0	0.7749
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	17.9	0.8093
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10033437 [exp]	19.4	0.7092
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	19.4	0.7881

Compare expression of checked genes

Lus10018646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.