Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039881 [exp] 100 / 6e-29 AT5G09520 44 / 1e-06 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1) Lus10039882 [exp] 71 / 5e-17 AT1G44224 37 / 0.001 ECA1 gametogenesis related family protein (.1) Lus10018648 [exp] 65 / 7e-15 ND 38 / 4e-04 Lus10018645 [exp] 43 / 2e-06 ND 35 / 0.004 Lus10029845 [exp] 40 / 4e-05 AT4G38080 40 / 6e-05 hydroxyproline-rich glycoprotein family protein (.1) Lus10018643 [exp] 40 / 4e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018647 pacid=23180488 polypeptide=Lus10018647 locus=Lus10018647.g ID=Lus10018647.BGIv1.0 annot-version=v1.0 ATGGCCGGTCCATCCAAGTCCTCCATCTTTTTCCTCTTTGCCATCTTCGTTGCCGTCTCGTTCTCCAACGTCCAAGTTGGAACCTCAGCTCGCCAGCTCC TCCAGCTGCCCATCCCCGCCGTCGGAAGCGTCATCCCGAACCTGCCGATGCCCCAGCTGCCTCCACTTCCTACAGGCCTTCCTGGAATCCCGGCCATTCC CGGGGTTCCCGGAATTCCTTCTGTCCCGAAGGTCCCGGAGCTGCCTGCGGTCACCGCTCTCCCGATTCCAAACATCCCCAAAATTCCCGGAGTCCCTGGA AACTAA
AA sequence Show only first row Show all	>Lus10018647 pacid=23180488 polypeptide=Lus10018647 locus=Lus10018647.g ID=Lus10018647.BGIv1.0 annot-version=v1.0 MAGPSKSSIFFLFAIFVAVSFSNVQVGTSARQLLQLPIPAVGSVIPNLPMPQLPPLPTGLPGIPAIPGVPGIPSVPKVPELPAVTALPIPNIPKIPGVPG N

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10018647 [exp]	0	1
					Lus10018648 [exp]	1.0	0.9724
AT1G44224			ECA1 gametogenesis related fam...		Lus10039882 [exp]	1.4	0.9263
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	1.7	0.8937
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	2.4	0.8805
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10026769 [exp]	4.7	0.8424
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Lus10008822 [exp]	5.7	0.8539
AT2G42760			unknown protein		Lus10019924 [exp]	5.7	0.8873
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	8.8	0.8358
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10003719 [exp]	9.2	0.8868
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	12.2	0.8313

Compare expression of checked genes

Lus10018647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.