Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33850 44 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015406 [exp] 44 / 0.0002 AT2G33850 42 / 3e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015700 [exp] 43 / 0.0002 AT1G03820 / unknown protein Potri.007G137001 [exp] 42 / 0.0007 AT1G03820 / unknown protein Potri.004G048301 [exp] 41 / 0.0008 AT1G28400 45 / 4e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018650 pacid=23180490 polypeptide=Lus10018650 locus=Lus10018650.g ID=Lus10018650.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCTGGGCAAAACCTCTTCCTTGCCATGTTCATCCTCGTCGTTGCACTCTCTTCTTCTTCTTCCACCATTGAAGCCAGAGAAGGCAGGCTGT TCTTCAGCAAATACTTCCATTCCTCCACCACCCAACAAACCCCCATCTCTGAAATCTCATCAACACCCTCCTCTTCTCCCGCCACGTCACCTGCTCCTTC CCCTGTTTCCGCCGACGAGAGCCAGATCATCGCCGCAAACGACGCAGAACTCGAGGCGGCGCTCAACGGCGACGACGGAAGCGTTTATTCTGCAGTCGGC AAAGAAAACAGAGTCGCCGGTGCTAGTGAGTATCGCGGCCAAAGCAGAAGCAACTCTGGAAACGAGATGGATGGGTTCAACCGGGGGAAACGTGGGAGCA ATAATTTTGACGACAGTGTCAATCTTGCTGCTACTAATGGTTTCAAGAATGTCGACGGTGACGACGGTAGCGTTTACTCTGCCACCAGCGAGGAAAACAG AGTTTCCGGCGGCGATAATGAGTATCGCGGCCAAAGCAGCAGTAGCTATGGAAACGAGTTGGATGTGTTTGACGGGGGAAGAAGTGGGACCAATAATTTC GACGAAAGTGTCAATCTTGATGCTGCAAAATATCGGTTCCACAAGGTCGATTACAGCAAGCAATACAAATTTAATAACAATGATGATGATAACCATGCAT ACTCTGCTTCGACCAAGCCTCAGTACCAGTACCAGAGCTACAACGGTGGCAACGAGGAGGAGAAAGAACAGGAATTCTCCGGCAATGGCTTCAGCAATCA GTATAACAATAGAGATGAAGGAGTTAGCTTCTCTGCAAGTAGCAATAATGGCGACGAAGGAAGCTACAATGGTAATAGTAATGGGTACGGAGAGGTTGAG AGGCAGGGGATGAGTGATACGAGGTTTATGGCGGGTGGGAAGTACTATCATGATGTTAACCAGGAATGGCCATGA
AA sequence Show only first row Show all	>Lus10018650 pacid=23180490 polypeptide=Lus10018650 locus=Lus10018650.g ID=Lus10018650.BGIv1.0 annot-version=v1.0 MASSGQNLFLAMFILVVALSSSSSTIEAREGRLFFSKYFHSSTTQQTPISEISSTPSSSPATSPAPSPVSADESQIIAANDAELEAALNGDDGSVYSAVG KENRVAGASEYRGQSRSNSGNEMDGFNRGKRGSNNFDDSVNLAATNGFKNVDGDDGSVYSATSEENRVSGGDNEYRGQSSSSYGNELDVFDGGRSGTNNF DESVNLDAAKYRFHKVDYSKQYKFNNNDDDNHAYSASTKPQYQYQSYNGGNEEEKEQEFSGNGFSNQYNNRDEGVSFSASSNNGDEGSYNGNSNGYGEVE RQGMSDTRFMAGGKYYHDVNQEWP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33850			unknown protein		Lus10018650 [exp]	0	1
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	7.7	0.9099
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	8.5	0.9037
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	10.6	0.9110
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	11.5	0.8983
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	11.7	0.9153
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	17.0	0.8995
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	17.5	0.8833
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	17.5	0.8881
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	19.3	0.8695
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	23.0	0.9089

Compare expression of checked genes

Lus10018650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.