Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07960 906 / 0 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT4G31590 764 / 0 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT2G24630 743 / 0 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT3G07330 738 / 0 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT3G28180 736 / 0 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT5G03760 394 / 1e-130 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 392 / 7e-130 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT5G22740 389 / 8e-129 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT2G35650 387 / 1e-127 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT1G24070 381 / 2e-125 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007715 [exp] 1137 / 0 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10026923 [exp] 751 / 0 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10039475 [exp] 746 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10039440 [exp] 745 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10025886 [exp] 740 / 0 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10020120 [exp] 709 / 0 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10038217 [exp] 667 / 0 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10008646 [exp] 392 / 4e-130 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 386 / 1e-127 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114200 [exp] 1025 / 0 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.005G146900 [exp] 1018 / 0 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.018G009300 [exp] 762 / 0 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 756 / 0 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G248400 [exp] 733 / 0 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.014G190900 [exp] 704 / 0 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.010G234100 [exp] 411 / 3e-137 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 400 / 2e-133 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G190701 [exp] 385 / 2e-131 AT3G07330 429 / 5e-148 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.006G116900 [exp] 395 / 4e-131 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10018651 pacid=23176222 polypeptide=Lus10018651 locus=Lus10018651.g ID=Lus10018651.BGIv1.0 annot-version=v1.0 ATGGTCTCCCTGGGCTCCGCCATCAGACGCCGGGTCAGGTCGGGCCGCACCGACAACGACGCTGACGTAGGAGTTAGCGAGAACCCGACCGTCAGGACCC GGTTTCATTCTTGCATCAGGGTCTTCCTTTGGCTGTCGGTGCTGCTTCTAGGGTTCGAATTCGTGGCGTATTTCAAAGGCTGGCATTTTGAAGCCCCCCA TCTGGAATTGCAGCACCTCCTCGCTACCCCTCTCGGGTTTAAGGATTTCTTCGACTCAATTTACTCCCGCTGGGTTCTCTTCCGGGTCGAGTACCTTGCT CCGCCGCTCCAGTTCCTTGCAAATGCTTGCATCGTGCTTTTCCTTATTCAGAGCATAGACAGGCTCGTCCTCTGTCTGGGTTGTTTCTGGATCCGGCTGA AGAAGATCAAACCCGTCCCCAAACCGGCCGCCACCGACATGGAAACCGGCGAGAAGGGCTACTACCCAATGGTGCTTGTTCAGATCCCCATGTGTAACGA GAAAGAGGTTTATCAGCAATCAATTGGAGCCGTGTGCAATCTGGATTGGCCGAAGTCCAAGATTCTAATCCAAGTTCTCGATGATTCTGATGATCCCACA ACCCGGCTCTTAATCAATGAGGAAGTCCAGAAATGGCAGCAACAAGGCGCCAACATTTTGTATAGACACCGTGTGATTAGAGATGGATACAAAGCTGGAA ACCTCAAATCTGCCATGAACTGCAGCTACGTCAAAGACTATGAATTTGTTGCCATTTTCGATGCTGACTTCCAGCCCACCCCGGATTTTCTCCAGAGAAC GGTCCCCCATTTCAAGGACAATGAGGAACTGGCGCTTGTTCAAGCTAGGTGGTCGTTTGTTAATAAGGATGAGAACCTACTCACTAGATTGCAGAACATT AACTTAGCTTTCCATTTCGAAGTAGAGCAGCAAGTAAACGGCGTGTTTCTCAACTTCTTTGGATTCAATGGGACTGCTGGTGTTTGGAGGATTAAGGCTT TGGAGGAATCTGGTGGTTGGTTAGAGAGGACTACTGTTGAGGACATGGATATAGCTGTTCGTGCTCATCTCCATGGCTGGAAGTTTGTTTTCCTCAATGA TGTCGAGTGCCAGTGTGAATTGCCTGAATCATACGAGGCTTACAGAAAGCAACAACACAGATGGCATTCTGGTCCTATGCAGCTGTTTAGACTCTGTCTG CCTGCTATTATTCGATCAAAGATTAGCGTATGGAAGAAGTGCAATTTGATATTTCTCTTCTTCCTGCTGAGGAAGTTGATCCTGCCATTTTACTCCTTCA CACTCTTCTGTATTATTCTGCCGATGACAATGTTTATACCAGAGGCCACACTTCCAGCATGGGTTGTATGCTATATCCCGGCCACCATGTCATTCTTAAA CATCCTCCCAGCACCGAAAGCCTTCCCCTTCATTGTCCCTTACCTCTTATTCGAGAACACCATGTCGGTAACCAAGTTCAATGCAATGATCTCTGGACTA TTTCAGCTGGGGAGTGCCTATGAGTGGGTTGTCACAAAGAAGTCGGGACGATCATCAGAAGGCGACCTTGTGGCGCTGGCTCAGAAAGAGACTAAACATC AAAGGGGTTCGTCCGAGCCTAACCTAGCAGAGATGAAGGAAGCGATTGTGAAGCAAGAGCAGAAAGAGCTGAAGAAGAAGAAACACAACAGGATATACAC AAAGGAGTTATCTTTGGCTTTCCTTCTTTTAACAGCTGCAGCAAGGAGCCTGCTATCAGCTCAGGGTATTCATTTCTACTTCTTGCTGTTCCAGGGAGTA TCATTCCTACTGGTGGGTCTGGACTTGATAGGAGAGCAGGTTCAGTGA
AA sequence Show only first row Show all	>Lus10018651 pacid=23176222 polypeptide=Lus10018651 locus=Lus10018651.g ID=Lus10018651.BGIv1.0 annot-version=v1.0 MVSLGSAIRRRVRSGRTDNDADVGVSENPTVRTRFHSCIRVFLWLSVLLLGFEFVAYFKGWHFEAPHLELQHLLATPLGFKDFFDSIYSRWVLFRVEYLA PPLQFLANACIVLFLIQSIDRLVLCLGCFWIRLKKIKPVPKPAATDMETGEKGYYPMVLVQIPMCNEKEVYQQSIGAVCNLDWPKSKILIQVLDDSDDPT TRLLINEEVQKWQQQGANILYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLQRTVPHFKDNEELALVQARWSFVNKDENLLTRLQNI NLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFVFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCL PAIIRSKISVWKKCNLIFLFFLLRKLILPFYSFTLFCIILPMTMFIPEATLPAWVVCYIPATMSFLNILPAPKAFPFIVPYLLFENTMSVTKFNAMISGL FQLGSAYEWVVTKKSGRSSEGDLVALAQKETKHQRGSSEPNLAEMKEAIVKQEQKELKKKKHNRIYTKELSLAFLLLTAAARSLLSAQGIHFYFLLFQGV SFLLVGLDLIGEQVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	0	1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	2.0	0.8837
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	2.0	0.8840
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	2.2	0.8742
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	3.2	0.8510
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	3.5	0.8765
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	4.2	0.8552
AT1G64650			Major facilitator superfamily ...		Lus10003219 [exp]	4.2	0.8771
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	5.9	0.8701
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10034118 [exp]	8.7	0.7698
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	8.8	0.8448

Compare expression of checked genes

Lus10018651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.