Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12210 218 / 2e-70 DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007717 [exp] 311 / 6e-107 AT3G12210 267 / 1e-91 DNA binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114400 [exp] 266 / 5e-89 AT3G12210 268 / 1e-91 DNA binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018653 pacid=23176209 polypeptide=Lus10018653 locus=Lus10018653.g ID=Lus10018653.BGIv1.0 annot-version=v1.0 ATGTTGTCTTTGTCGTTGACAACATCGTTTTCTCTTGTTACCGATCCTCAATCGAGTTTTCCTGTTCACGCTTTTGAGTTTGTTCGTTTTGCTGATCTGA TCACTCGTGTTGATCGCATATGCATCTCATTGGATGACAACCCAGCGGCAAAAAGCTTGCGATTTGACATTTTCAGAAGGAGAGAGACACATTGCACAGA TAAAGAAAAGGCAACTCCCGCCGGCGACGACGACTTCGACTTCACTAGGAGCTGTTTCCACTTTGCAGCAAGCCAGCAACAAATGGTGGATTTCCAGAGC TCCGACATCAGTCTCTGGAAAGATGCGCTCCAAAGTTATCCCGCTCGGATAGCGTCTCTTGACAAACCCGACCTCGTTTCCCTCGACGAGTTCTACCGCG TTGAACTTCCTTCCGCCATTAATCTGCGGAACCCTAACCCTCACATCACCACTCCCGAACTTTCCAAGCTTATGCAGTGGAAGCTATCCCGAGGAAAATG GCGGCCGCGATTACTGGATTTCGTATCTTCTCTCGACGAGGAGCTTGTGAAATCGGCTTCCAGAAAGGCATTCCAATCCCTCCCTGACTTATCGAAAGCA ATCTCTGCTCTAACGGTTCTAAAAGGCGTTGGTCCGGCCACTGCATCTGCCGTTCTTGCTGCTTACTCGCCTGATGTCGCCCCCTTCATGTCAGACGAAG TAACTATTCTGAAAGCGATTTGTTTTCTCAACGTTTTCGTTTATTCTGTCTTAAGGTTGTTTGCAGTACTTGCTCATCATTGTCTCCTTTGTGTCGTTGA GGCTATGGAAGCAGCTCTTGGAAACTCCAAAGAGTACACGCTGAAAAGGTATCTGGTGTTCGCTGAAAAACTGCAGATGAAAGCCAAGAGTTCCAGACCT TGCATCACTAGAACTATGGAGGCAGAATGTGTAGTGTTTGTGAGAGTTGAGGCTTCCAGCTGGGCACTTAAGAGCGACGACCAACGGTTCCCACAGATTC CTGTGGCCATACCCATCTTTTAG
AA sequence Show only first row Show all	>Lus10018653 pacid=23176209 polypeptide=Lus10018653 locus=Lus10018653.g ID=Lus10018653.BGIv1.0 annot-version=v1.0 MLSLSLTTSFSLVTDPQSSFPVHAFEFVRFADLITRVDRICISLDDNPAAKSLRFDIFRRRETHCTDKEKATPAGDDDFDFTRSCFHFAASQQQMVDFQS SDISLWKDALQSYPARIASLDKPDLVSLDEFYRVELPSAINLRNPNPHITTPELSKLMQWKLSRGKWRPRLLDFVSSLDEELVKSASRKAFQSLPDLSKA ISALTVLKGVGPATASAVLAAYSPDVAPFMSDEVTILKAICFLNVFVYSVLRLFAVLAHHCLLCVVEAMEAALGNSKEYTLKRYLVFAEKLQMKAKSSRP CITRTMEAECVVFVRVEASSWALKSDDQRFPQIPVAIPIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	0	1
AT1G48620		HON5	high mobility group A5 (.1)		Lus10028911 [exp]	2.0	0.9172
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10007132 [exp]	2.0	0.9195
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10036517 [exp]	6.3	0.9003
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Lus10028598 [exp]	6.7	0.8547
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10004328 [exp]	8.9	0.8840
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	9.2	0.8849
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	9.2	0.8673
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	10.0	0.8823
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	12.5	0.9040
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	14.7	0.8795

Compare expression of checked genes

Lus10018653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.