Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58440 825 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G37760 773 / 0 SQE3 squalene epoxidase 3 (.1) AT2G22830 757 / 0 SQE2 squalene epoxidase 2 (.1) AT5G24150 508 / 9e-177 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 494 / 2e-171 SQE6 squalene monoxygenase 6 (.1) AT5G24140 462 / 7e-159 SQP2 squalene monooxygenase 2 (.1) AT5G24155 86 / 4e-20 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 42 / 0.0006 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007718 [exp] 1053 / 0 AT1G58440 828 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039649 [exp] 815 / 0 AT1G58440 791 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011732 [exp] 809 / 0 AT1G58440 785 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10000593 [exp] 44 / 0.0002 AT2G35660 639 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146700 [exp] 872 / 0 AT1G58440 766 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.002G114500 [exp] 866 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G007600 [exp] 818 / 0 AT4G37760 795 / 0.0 squalene epoxidase 3 (.1) Potri.015G120900 [exp] 808 / 0 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014378 [exp] 654 / 0 AT1G58440 603 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014376 [exp] 644 / 0 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G121136 [exp] 625 / 0 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 170 / 2e-51 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 132 / 2e-36 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121412 [exp] 53 / 2e-08 AT1G58440 42 / 1e-05 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01946 [flax] [poplar] Thi4 Thi4 family CL0063 [flax] [poplar] NADP_Rossmann PF08491 [flax] [poplar] SE Squalene epoxidase
Representative CDS sequence Show only first row Show all	>Lus10018654 pacid=23176187 polypeptide=Lus10018654 locus=Lus10018654.g ID=Lus10018654.BGIv1.0 annot-version=v1.0 ATGGTGGAGTATGGCAGCCTGTTTGGCTGGATCCTTGCCTCTGTCCTCGGCCTGCTCGGTTGTTACGTTTTCGCCGTGAGGAGGAATGCAGAGAGTAAAG GCACAAGTGCATTGTCGGAAGGGAGACGTGATTCCGTCCGGAATCTCACCACCACTAAAGGAGAACACAGATCTGGAGATGCTAGCGACGCCGATGTTCT CATCGTCGGCGCTGGCGTTGCCGGCTCAGCTCTCGCCCACACTCTCGGCAAGGATGGGCGTAAGGTGCATGTCATTGAAAGAGATTTGACCGAGCCGGAC AGAATTGTTGGTGAATTGCTTCAACCAGGAGGTTACCTGAAGTTGATAGAATTGGGTCTTCAAGATTGTGTGGAGGAAATTGATGCTCAACGGGTGTTCG GTTATGCCCTTTTTAAGGATGGGAAACGTACCCTACTTTCATATCCATTGGAAAATTTTCATTCGGATGTAGCTGGAAGGAGCTTTCATAATGGGCGCTT CATACAGAGAATGCGGAAGAAAGCTGCATCACTTCCCAATGTCCGACTGGAGCAAGGAACTGTGACGTCCCTGCTCGAGAAAGAAGGAACTATCAAAGGT GTGCAGTACAAGAACAAAGACGGAGAACTGCAGACAGCATATGCACCCTTAACTATTGTCTGCGATGGTTGTTTCTCAAACTTACGCCGCACACTCTGCA ACCCAAAGGTTGATGTTCCATCATGCTTCGTTGGTTTGGTCTTGGAGAACTGTGATCTTCCCTTTGCAAATCATGGACATGTTATACTGGGAGATCCTTC TCCGATTTTATTCTATCCCATCAGTAGTACGGAAGTTCGCTGTCTGGTTGATGTTCCTGGACAGAAGGTTCCTTCCATCTCGAATGGTGAAATGGCAACG TACTTGAAGACTGCTGTAGCGCCTCAGCTTCCACCAGAATTATACGATTCATTTGTCGCAGCTGTTGAGAAAGGGAACATCAGAACAATGCCGAACCGAA GCATGCCAGCTGCCCCATATCCAACTCCTGGCGCCTTGTTAATGGGTGATGCATTCAACATGCGCCATCCTCTGACAGGAGGAGGAATGACTGTTGCGCT GTCTGACATTGTTGTGCTACGGAATCTTCTCAGGCCTTTGCACGACCTGCACGATGCTCCTACTCTCTGCAGATACCTGGAATCGTTCTACACCTTGCGT AAGCCTGTTGCTTCAACAATAAACACGCTAGCGGGTGCATTGTACAAGGTGTTCTCATCGTCTCCTGACAAAGCGAGGCAGGAGATGCGGGAAGCTTGTT TCGATTATCTTAGCCTTGGAGGTGTATGCTCGAGCGGACCAGTTTCGTTACTGTCAGGGTTAAACCCTCGGCCGTTAAGCTTGGTTCTCCATTTCTTTGC GGTCGCAGTATATGGGGTAGGGCGACTCTTGGTTCCTTTCCCTTCACCAAAACGCATCTGGATTGGAGCTAGGGTGATTTCGGGGGCATCAGGGATAATA TTCCCAATAATAAAAGCAGAAGGAGTAAGGCAGATGTTCTTCCCAGCAACTGTGCCTGCTTACTACAGAGCCCCTCGCGTTAACTGA
AA sequence Show only first row Show all	>Lus10018654 pacid=23176187 polypeptide=Lus10018654 locus=Lus10018654.g ID=Lus10018654.BGIv1.0 annot-version=v1.0 MVEYGSLFGWILASVLGLLGCYVFAVRRNAESKGTSALSEGRRDSVRNLTTTKGEHRSGDASDADVLIVGAGVAGSALAHTLGKDGRKVHVIERDLTEPD RIVGELLQPGGYLKLIELGLQDCVEEIDAQRVFGYALFKDGKRTLLSYPLENFHSDVAGRSFHNGRFIQRMRKKAASLPNVRLEQGTVTSLLEKEGTIKG VQYKNKDGELQTAYAPLTIVCDGCFSNLRRTLCNPKVDVPSCFVGLVLENCDLPFANHGHVILGDPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMAT YLKTAVAPQLPPELYDSFVAAVEKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLHDLHDAPTLCRYLESFYTLR KPVASTINTLAGALYKVFSSSPDKARQEMREACFDYLSLGGVCSSGPVSLLSGLNPRPLSLVLHFFAVAVYGVGRLLVPFPSPKRIWIGARVISGASGII FPIIKAEGVRQMFFPATVPAYYRAPRVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10018654 [exp]	0	1
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10007718 [exp]	1.0	0.9604
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	9.4	0.9299
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	9.6	0.9281
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	11.4	0.9285
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	11.8	0.9222
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	12.6	0.9200
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	15.5	0.9255
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	17.5	0.9111
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	19.7	0.9232
AT2G20820			unknown protein		Lus10031625 [exp]	24.5	0.9097

Compare expression of checked genes

Lus10018654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.