Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44920 249 / 7e-83 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007720 [exp] 447 / 2e-160 AT1G44920 288 / 4e-98 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114900 [exp] 261 / 1e-87 AT1G44920 232 / 2e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11255 [flax] [poplar] DUF3054 Protein of unknown function (DUF3054)
Representative CDS sequence Show only first row Show all	>Lus10018656 pacid=23176284 polypeptide=Lus10018656 locus=Lus10018656.g ID=Lus10018656.BGIv1.0 annot-version=v1.0 ATGGATATGAATATGATGGTGGTAAGCCAAGCTCCTGGAGGAGCATCACTCTCCGGCAGAAGAAGAAGTGCCACCGCCGCCATCCAATTCACCCTTCCCA AACCTCCCTTGTTTCCCCAACTAGCCCAGCCTACCAGAAACCATAGGAGACGCCGCCTTTGTCTCACTTTCTGTAAGGCTGACGGCGGAGGAAGATTAGA CGCCCCGACTTCCTCCTCCTCAATCAGGCAATCGGAGACTTCGGAAACGCAGCCAACAGCCCGTCCATCTCTTCCGAATTTGGATACGGTTTTCGTGGGA CAGAAGAATGTTCCTCTTGAAGGTGTCATTCAGTTTGACAAACCCAGCTCCTCCTCTTCTTCTTCGCGACTTTATAAATGGGGTCGGGTCGCCCTGTTAG CTGGAGGGGATGTACTGTCGTTGCTCATATTCTCAGCAATTGGGAGACTCAGCCATGGCTTTCCTGTACTTGACGTGGATACATTACGCACAGCTGATCC TTTTGTTGCAGGGTGGTTCCTGGGTGCTTACTTTCTTGGGGGCTATGGTGAAGATGGGCGTGGAATGAGCGGTACGTCCAAGGCTGTTGTCGCAGCTGCC AAATCTTGGGCTGTTGGAATTCCTCTGGGGATAGTCATAAGGGCAGCAACATCAGGGCATGTTCCAGCTTCTACCTTTGTATTAGTGACAATGGGAAGCA CATGCGTTTTGCTGACGGGGTGGAGAGCACTAGCATCCAGCATTCTTCCTAAGAAGGAGGATAAGAAGGATGACATGTACCGACGGGGAAACCCCTTCGA ATTGTTTGAGGTACTTCTCATTTTCTATCTGATAATTTGA
AA sequence Show only first row Show all	>Lus10018656 pacid=23176284 polypeptide=Lus10018656 locus=Lus10018656.g ID=Lus10018656.BGIv1.0 annot-version=v1.0 MDMNMMVVSQAPGGASLSGRRRSATAAIQFTLPKPPLFPQLAQPTRNHRRRRLCLTFCKADGGGRLDAPTSSSSIRQSETSETQPTARPSLPNLDTVFVG QKNVPLEGVIQFDKPSSSSSSSRLYKWGRVALLAGGDVLSLLIFSAIGRLSHGFPVLDVDTLRTADPFVAGWFLGAYFLGGYGEDGRGMSGTSKAVVAAA KSWAVGIPLGIVIRAATSGHVPASTFVLVTMGSTCVLLTGWRALASSILPKKEDKKDDMYRRGNPFELFEVLLIFYLII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44920			unknown protein		Lus10018656 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	5.2	0.8430
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	5.3	0.8286
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	6.5	0.8475
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	7.2	0.8384
AT5G62650			Tic22-like family protein (.1)		Lus10039294 [exp]	9.8	0.8292
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	11.0	0.8108
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	11.4	0.8327
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	13.8	0.8150
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	14.4	0.8441
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	16.2	0.8246

Compare expression of checked genes

Lus10018656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.