Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58470 227 / 4e-71 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G07810 207 / 5e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 201 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 201 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 197 / 5e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 191 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G33410 187 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 152 / 4e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 147 / 1e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 143 / 4e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007721 [exp] 601 / 0 AT1G58470 222 / 6e-68 RNA-binding protein 1 (.1) Lus10043168 [exp] 205 / 4e-61 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 202 / 2e-60 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 200 / 5e-60 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000537 [exp] 202 / 6e-60 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 201 / 6e-60 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 198 / 4e-59 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 199 / 6e-59 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 199 / 8e-59 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G115000 [exp] 248 / 6e-80 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1) Potri.014G012700 [exp] 240 / 5e-74 AT1G58470 180 / 2e-51 RNA-binding protein 1 (.1) Potri.008G170400 [exp] 211 / 5e-64 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G222400 [exp] 208 / 1e-62 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 207 / 2e-62 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G258600 [exp] 202 / 8e-61 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G361300 [exp] 203 / 1e-60 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 202 / 1e-60 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G088100 [exp] 202 / 3e-60 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 200 / 1e-59 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10018657 pacid=23176196 polypeptide=Lus10018657 locus=Lus10018657.g ID=Lus10018657.BGIv1.0 annot-version=v1.0 ATGGAATTCGACAGGGCGAAGCTTTTCGTCGGAGGAATAAGTCGGGAGACGAACGAGGAAGCTCTCAGGGTTCACTTCAGCAGGTACGGAGAAGTTGCTG GTTCACTTATTGCCAAGGACAGGACTACCAAGATTCCCAGAGGGTTTGGCTTCGTTTGGTTCTCTGACCCTTCATTTGCAGACAAGGCTCTGCGAGAAAC TCATTTTCTATTGGGTCGTACGGTAGAAGTCAAGAAAGCGATCCCGAGAAGTGAACAGTATCAGAACCACCAGCAACAGCAGCCATTCATTGAACAAAAG CGCAGTGGATTCAGTATCGACAGTAGCAATGGTAGCAGTAGCATCATTCCTCTCAGGACTAAAAAGATATTTGTAGGGGGGTTATCAGCTGGTTTAACTC AGGCTCAGTTTAAGCATTATTTCGAGAGGTTTGGTAAAATAGTGGATGTGGTTGTGATGCAAGACAGCTCGACAAACCGACCAAGGGGATTCGGGTTCGT GACCTTTGATTCAGAAGATTCCGTTGAGAAGGTTATGCTCAATCCTTTCCATGAGTTGAATGGCAGGCAGGTGGAGGTCAAGAGAGCTGTGCCGAAGGAT GAAGTGAACTTGAACAAGAACACTAATAACAGCTTATCAGCAAGTTACAACACTAATTGGTCCTCTCCTAGGATTATTGAGCCTCCGAGGGTCCAACCAT ATTCATACGGTTCTGGTTCTGGTTATCAACTCTATCCGTCTTATGCTCCCATGTATATCGGTGGTGGGTATCCTCCTTGTGGAACTGGATTGTATAGCAG TGGGTTTCCAGTGGTTGGATATGGTAGAGCTACAACAGTTGTGACTGGGAACCATTGGAGCGGTCCGCTCATGGTTGGAGGCGCAGGCGCAGGCGCAGGC TTGGCTCCTATCCCTTATGGTGACGGTTATCTCTATCCTTACCCAAGTGGTGGGTATTGTGATATGAGGAGCATGGTAAATAACTATACTGGATTTGTAG GAACTGGAATTGATGAAAAACTAAATATGGTTTTCAGCGCAAGTGTATGCTCTCCAACCAATATTCTACCGCGTCAGGTTGAAGGACTAACTATGCAAGT CCGCGGTTTAAGTATGAGGGATGGTCTGGGTCCGGGCAGCGCTTCTTCGAGCTAA
AA sequence Show only first row Show all	>Lus10018657 pacid=23176196 polypeptide=Lus10018657 locus=Lus10018657.g ID=Lus10018657.BGIv1.0 annot-version=v1.0 MEFDRAKLFVGGISRETNEEALRVHFSRYGEVAGSLIAKDRTTKIPRGFGFVWFSDPSFADKALRETHFLLGRTVEVKKAIPRSEQYQNHQQQQPFIEQK RSGFSIDSSNGSSSIIPLRTKKIFVGGLSAGLTQAQFKHYFERFGKIVDVVVMQDSSTNRPRGFGFVTFDSEDSVEKVMLNPFHELNGRQVEVKRAVPKD EVNLNKNTNNSLSASYNTNWSSPRIIEPPRVQPYSYGSGSGYQLYPSYAPMYIGGGYPPCGTGLYSSGFPVVGYGRATTVVTGNHWSGPLMVGGAGAGAG LAPIPYGDGYLYPYPSGGYCDMRSMVNNYTGFVGTGIDEKLNMVFSASVCSPTNILPRQVEGLTMQVRGLSMRDGLGPGSASSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10018657 [exp]	0	1
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10007721 [exp]	3.5	0.9100
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	5.6	0.9278
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	9.4	0.9155
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	9.5	0.9274
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	9.6	0.9188
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	23.8	0.9095
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	24.3	0.9103
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	25.0	0.9016
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	25.2	0.8048
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	28.6	0.9090

Compare expression of checked genes

Lus10018657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.