Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44910 649 / 0 ATPRP40A pre-mRNA-processing protein 40A (.1.2) AT3G19670 460 / 8e-147 ATPRP40B pre-mRNA-processing protein 40B (.1) AT3G19840 73 / 5e-13 ATPRP40C pre-mRNA-processing protein 40C (.1) AT4G16280 47 / 8e-05 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 44 / 0.0006 flowering time control protein-related / FCA gamma-related (.1) AT2G41020 43 / 0.0008 WW domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007723 [exp] 1304 / 0 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10033770 [exp] 550 / 0 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10006142 [exp] 538 / 3e-176 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1) Lus10012908 [exp] 101 / 1e-21 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10030562 [exp] 61 / 4e-09 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10017070 [exp] 49 / 2e-05 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 49 / 2e-05 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006305 [exp] 46 / 3e-05 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4) Lus10029574 [exp] 46 / 0.0002 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G013100 [exp] 810 / 0 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.001G289800 [exp] 629 / 0 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.009G085400 [exp] 619 / 0 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.010G170400 [exp] 102 / 8e-22 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.010G147900 [exp] 50 / 6e-06 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 48 / 2e-05 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0584 [flax] [poplar] FF PF01846 [flax] [poplar] FF FF domain
Representative CDS sequence Show only first row Show all	>Lus10018659 pacid=23176194 polypeptide=Lus10018659 locus=Lus10018659.g ID=Lus10018659.BGIv1.0 annot-version=v1.0 ATGACCCCTACACAGCAAGGACAGCCATTTATGCATGTAGCTTCCCAACAGTTCCGACCTGTTGGACAGGGCATTCCCTCTTCTAATATTGCGATGCATC CGAGTCAGCAGCATCAGTATTCTCAGCCAATGCATCAGTTGCCTCCATGGTCTAGTCAACAAGGGCACTTGCAACCTTCATCACAGGCTGTACCTATGCA GTATGTCCAACCAAATAGGCATCTTACAGCTAGCTCTACACAGCCACAGCCTGCAGTGGGTGCCTCAGGGGTTCCTTTCTCTTCAACATATAATTTTGTG CCATCATTTGGGCAGCCACAAAATATTCATGGATCATCCCAATTTCAGCCCGCTCCTCAGGTCCACACATCTGTAGCACCTCCTGTAGGTCAGCCTTGGC TGCCCCCTCCAAGTAATGGGGCACCACCTGTTATGCAAGTGCAGCCAACTGGGCAACAACCTCCTGTATCTTCTTCTGACCCTGCAACAGATGCTCCTAG CAGTGGTCTGCAATCTTCACAGGATTGGCAAGAACATACAGCTCCTGATGGGAGGAGATATTATTACAACAAGAGAACACGACAATCTAGTTGGGAGAAG CCATTTGATCTGATGACACCAATTGAGAGGGCTGATGCTTCAACCGTGTGGAAGGAATTCACTACACCAGAGGGTAAAACATATTACTATAACAAGGTTA CAAAGCAGTCGAAGTGGTCAATACCTGAGGAATTGAAGTTGGCTCGTGATCAAGCTCAGAACGCTGCTGCCCAGGGAACTCAGATTGTAACAGATGTGTC TGCTCAGGGATTGTCTGCTGCTTTAGGAACTACTAGTGGAACAGCTGCTGCAGGTATTTCGATTACCTCGCCCCCCTCGGTGCCTAATGAAGTTGGTGCA AGTCCAGTGCCACTCTCACTTGCTGGAGTTCCCCAGTCTTCCGGATCATCTGCTCTTGTTGCACCGTCAATTGTGACGAGTACTGGTGTCCCAAGTTCTG TAGTTGTCATGGCTTCCTTACCTGCTGATGCTTCAGGAAGTACTGGTGTTCCTGCTGCTGCTCTAAATGAAAAGACATCACCATTGGGTAACTTCGATAA TGTATCATCCCAAGGCATCCCAGAATCCCAAGATGGATCTTCACATGACAATGAGGAAGCACCAAAGGGAGTGATAGCTGCCGGGAAAAATATAGAGTCC CCTTCGAAGGAGAAAACTCTAGATGACGAACCACTAGTTTTTGTCAATAAGCAAGAGGCAAAAAGTGCATTCAAGGCCTTACTAGAGTCAGCGAATGTCA AGTCTGATTCAACATGGGAGCAGGCAATGAGAGAAATTGTTAATGACAAGCGATATGGTGCCCTAAAGACACTTGGAGAGCGGAAACAGGCATTTAATGA GTACTTGGGTCAAAGGAAAAAAATAGAAGCTGAGGAGAGGCGCATAAGGCAAAAAAAAGCTCGTGAGGAATTTACAAAGATGCTTGAAGAGTCCACAGAG CTTACATCGTCTATGAAGTGGAGCAAGGCACTAAGCTTATTTGAGAATGATGAACGGTTCAAGGCTGTTGAGAAATCCAGAGATCGGGAGGATCTTTTTG ACAATTACGTTGTAGAACTTGAAAGGAAGGAAAGAGAAAAGGCTGCAGAGGAGCATAGGAGAAATGTGGCAGATTATAGGCAATTTTTGGAATCTTGTGA TTTCATTAAGGTGAACAGCCAGTGGCGGAAGGTCCAAGATCGGTTGGAGGATGATGAGACATGCTTGCGTCTTGAGAAACTTGAACGTCTGCTCATCTAT CAGGATTACATTCGGGACTTGGAGAGAGAAGATGAGGAACAGAAGAAGGCATATAAGGAACAACAATGGCGGGCCGAGCGAAAGAACCGCGATGCATTTC GGAAATTGATGGAGGAACATGTTGCAGCTGGTACTCTGACAGCCAGAACGCACTGGCTTGATTACTGTCTGAAGGTTAAGGATCTTCCTGAATATCAAGA TCTTGCAGAAAATACTTCTGGGTCAACACCAAAAGAGTTATTTGAGGATGTTTATGAGGACTTGGAGAAACAGATAACTATGGTTTTGACATGGTCGTTT GAGGATTTCAAAGCTGCTCTGTCTGGGAACGTTGATTCCCAGTCTATATCGGATATCAACTTGAAGGAGATCACTGCATCATCTAACTGGGAAGAGTCAA AACCACTATTCGATGACAGTCAGGAGTACAGGGCGATTGGCGAAGAGGATTACAGGAAAGAAATTTTTGAGGAATATGTTGCACATTTACAGGAAAAAGC TAAAGAAAAGGAACGTAAGCGTGAAGAAGAGAAGGCCAGAAAGGAGAAAGAAAGAGAGGAGAAAGAAAGGCGGAAAGAGAGAAAGGAGAAGGAGAAAGAA CGGGAAAGAGAAAAGGACAAGGGAAAAGAACGTACAAGAAAAGATGAAACAGATAGTGAAACTATGGAAATGGAAGCAAGTGACGGTTATGGGCACAAAG AGGAGAAGAAGAGGGATAAAGAGAGGAAACACAAGAAACGAAATCATAGTAATGCTGAAGATATAAGCTCGGATAAGGATGAAAAAGAGGAATCTAAAAA GTCCCGCAGACATGGGAGCGACCGTAAGAAGTCAAGAAAGCGTTCATACACACCTGAGTCGGAAACTGAGAGCCGGCACAAGAAAAACAGGAAGGATCGT GATGGTTCTCGTAGAAACGATGACCTAGAGGATGGAGAAGTCGGCGAGGATGGCGAAATCCGGTAG
AA sequence Show only first row Show all	>Lus10018659 pacid=23176194 polypeptide=Lus10018659 locus=Lus10018659.g ID=Lus10018659.BGIv1.0 annot-version=v1.0 MTPTQQGQPFMHVASQQFRPVGQGIPSSNIAMHPSQQHQYSQPMHQLPPWSSQQGHLQPSSQAVPMQYVQPNRHLTASSTQPQPAVGASGVPFSSTYNFV PSFGQPQNIHGSSQFQPAPQVHTSVAPPVGQPWLPPPSNGAPPVMQVQPTGQQPPVSSSDPATDAPSSGLQSSQDWQEHTAPDGRRYYYNKRTRQSSWEK PFDLMTPIERADASTVWKEFTTPEGKTYYYNKVTKQSKWSIPEELKLARDQAQNAAAQGTQIVTDVSAQGLSAALGTTSGTAAAGISITSPPSVPNEVGA SPVPLSLAGVPQSSGSSALVAPSIVTSTGVPSSVVVMASLPADASGSTGVPAAALNEKTSPLGNFDNVSSQGIPESQDGSSHDNEEAPKGVIAAGKNIES PSKEKTLDDEPLVFVNKQEAKSAFKALLESANVKSDSTWEQAMREIVNDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRIRQKKAREEFTKMLEESTE LTSSMKWSKALSLFENDERFKAVEKSRDREDLFDNYVVELERKEREKAAEEHRRNVADYRQFLESCDFIKVNSQWRKVQDRLEDDETCLRLEKLERLLIY QDYIRDLEREDEEQKKAYKEQQWRAERKNRDAFRKLMEEHVAAGTLTARTHWLDYCLKVKDLPEYQDLAENTSGSTPKELFEDVYEDLEKQITMVLTWSF EDFKAALSGNVDSQSISDINLKEITASSNWEESKPLFDDSQEYRAIGEEDYRKEIFEEYVAHLQEKAKEKERKREEEKARKEKEREEKERRKERKEKEKE REREKDKGKERTRKDETDSETMEMEASDGYGHKEEKKRDKERKHKKRNHSNAEDISSDKDEKEESKKSRRHGSDRKKSRKRSYTPESETESRHKKNRKDR DGSRRNDDLEDGEVGEDGEIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	0	1
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	1.7	0.9103
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	2.0	0.8954
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	4.5	0.9144
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	5.2	0.8867
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	6.7	0.9154
AT3G25680			unknown protein		Lus10035054 [exp]	12.8	0.8461
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10039918 [exp]	13.4	0.8650
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	14.3	0.8697
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10004108 [exp]	16.9	0.8806
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	17.7	0.8414

Compare expression of checked genes

Lus10018659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.