Plant FIBer expression Database

Lus10018660 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007724
[exp]
446 / 2e-159 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G115600
[exp]
60 / 4e-10 ND /
Potri.014G013200
[exp]
53 / 1e-07 ND /
PFAM info
Representative CDS sequence
>Lus10018660 pacid=23176257 polypeptide=Lus10018660 locus=Lus10018660.g ID=Lus10018660.BGIv1.0 annot-version=v1.0
ATGGCTGCTGCAGCTTCACAGGTCAAGCAACTTGGGGAGATTCTCAAAGAGCAACAGGAGCCTTTCATTCTGCAGACATACCTTATTGAAAAAGGATGCT
TCAATGGGAAGCAAAACAAAGAACAAGTTAGCCTTGGCTGCTTCAATGGCAAGAAGCACAGCAGCAGGAAAAAGGGAGTCCACAAGTTGGTCAGAATCCT
GTTGGATCAGATAGGTTCCATTAACAAGAGGGGAAAGAGTTCAGCGAAGACTCAGCAGGCAGAGAGGTTATCATCCTTCGATAGCAGCTCAACTACTCTG
AATTGGGGTTCTGAAGATGAAGAAGAAAATAGAGAAAACTGCTCATCATCATCATCATCAGGGAATAAATGTAGTTACCTGGACCTGCAATTCTGCAATC
CCAATGACCAAAAGGTACCAACTGACTTTTCCCCTCTCCCTAGCTCTGGCCTGCAATTGCATTGCATGGAAGATGAGAACCAGCAATTCAGCCCTGATTC
AGTTTTAGAAGGATTTACATCTACTCCTCATGAAGAAGCCTCTTCTCCAGCTAATAATAAGAATAGGGATGTTTCCGATTCACCATATCAAGTCATTTTA
CGGCCAGCCAAGCCCCAGAGACCAATCTCCAGAGTAGAGGTGCCTCAGCAACTTCTGTTTGATTGCATAGCACAAGTTGTTGAAATGGCCCATGGAAGCT
GCAGTAGGAAGAAGCTGTGGCGTACGAGTGAGAGGATACTAAGATCATGGTCATGGAGGAAAGGCGAACCTTTTCGTAACTTGGAGCTATGCGATCAGGG
GATCATTATAGACGAATGGAGCGATGAAGAGCAGCGGAGGGAGATTGGATTAGAGATTGAAGATCTGATATTCCAAGAGATCATGGTGGACTTGATTGGT
AATCAGCAGTAG
AA sequence
>Lus10018660 pacid=23176257 polypeptide=Lus10018660 locus=Lus10018660.g ID=Lus10018660.BGIv1.0 annot-version=v1.0
MAAAASQVKQLGEILKEQQEPFILQTYLIEKGCFNGKQNKEQVSLGCFNGKKHSSRKKGVHKLVRILLDQIGSINKRGKSSAKTQQAERLSSFDSSSTTL
NWGSEDEEENRENCSSSSSSGNKCSYLDLQFCNPNDQKVPTDFSPLPSSGLQLHCMEDENQQFSPDSVLEGFTSTPHEEASSPANNKNRDVSDSPYQVIL
RPAKPQRPISRVEVPQQLLFDCIAQVVEMAHGSCSRKKLWRTSERILRSWSWRKGEPFRNLELCDQGIIIDEWSDEEQRREIGLEIEDLIFQEIMVDLIG
NQQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10018660
[exp]
0 1
AT5G02440 unknown protein Lus10024400
[exp]
1.0 0.9074
AT5G67385 Phototropic-responsive NPH3 fa... Lus10011082
[exp]
3.0 0.8692
Lus10014040
[exp]
4.0 0.8332
AT5G67385 Phototropic-responsive NPH3 fa... Lus10011081
[exp]
5.3 0.8546
AT4G14605 Mitochondrial transcription te... Lus10035227
[exp]
7.6 0.8840
AT2G23700 Protein of unknown function, D... Lus10011308
[exp]
8.1 0.8429
AT1G71110 unknown protein Lus10035272
[exp]
8.5 0.8323
AT5G02440 unknown protein Lus10025345
[exp]
9.5 0.8390
AT4G21470 ATFMN/FHY riboflavin kinase/FMN hydrolas... Lus10018435
[exp]
13.0 0.8549
AT2G30390 FC2, FC-II, ATF... ferrochelatase 2 (.1.2) Lus10019224
[exp]
13.7 0.8636

Lus10018660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.